PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023538833.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 262aa    MW: 29115.8 Da    PI: 9.6858
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023538833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.6e-092167347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT eE +++ +a +++ ++   +W ++a++++ g+t  ++  +++ +
   XP_023538833.1 21 NWTVEENKRFENALALFDSDssdRWLKVAAMIP-GKTVGDVMKHYREL 67
                     8********************************.***********975 PP
2Myb_DNA-binding47.64e-15127171347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_023538833.1 127 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 171
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MKRGIGTLSP ATDRRSSSCS NWTVEENKRF ENALALFDSD SSDRWLKVAA MIPGKTVGDV  60
MKHYRELVAD VSDIEAGLVP IPGYATGNSF VLEWSNDGCG FGSVYGGAGK RGVSGRPSDH  120
ERKKGVPWTE EEHRQFLMGL KKYGKGDWRN ISRNFVTTRT PTQVASHAQK YFIRQLTGGK  180
DRRRSSIHDI TTVNLPDILT QPNTNTHSPI PYDSVTPICG ISSLGPKLLQ DRIFVGGNIH  240
GCQNISPYSP NVFQVQREQQ YK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-100MYB family protein