PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538693.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 567aa MW: 64219.2 Da PI: 6.8254

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538693.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	45.3	1.9e-14	248	299	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 r++W+ e ++F +a+++LG +k Pk il+lm+ ++Ltl +v+ HLQkY+ XP_023538693.1 248 SRIVWNLERRRKFSDALNKLG--DKCRPKLILKLMNEPCLTLRQVANHLQKYKA 299 69****************5..889************************85 PP
2	Myb_DNA-binding	22.1	3.5e-07	252	298	4	48
S-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwqkyl 48 W e ++ da ++lG + ++k+I + m+ +tl q+ +++qky+ XP_023538693.1 252 WNLERRRKFSDALNKLGDKcRPKLILKLMNePCLTLRQVANHLQKYK 298 55555679*******99********999**********7 PP
3	Response_reg	35	7.3e-13	20	113	11	107
HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS-- CS Response_reg 11 rellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfd 103 +l++++le ++ +++ g al +++ek +Dl++ ++mp+md + +l + + + + +i+++++ + + a++al Ga fl Kp++ XP_023538693.1 20 SSLFQSLLEALKF---TTTGLGCIALSMIQEKGdqFDLVMANVSMPDMDSFSFLHVLLKMN--IAVIFMSSTMNLKVATKALAEGACYFLQKPVS 109 5666777776666...6677777788888777777********************8865..****************************** PP HHHH CS Response_reg 104 peel 107 +++l XP_023538693.1 110 KDDL 113 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MNVSIFAPNS ARCCLQPHAS SLFQSLLEAL KFTTTGLGCI ALSMIQEKGD QFDLVMANVS 60 MPDMDSFSFL HVLLKMNIAV IFMSSTMNLK VATKALAEGA CYFLQKPVSK DDLKYVWQHV 120 YRSNINIAKL THKANCVDKA KSGQEFVGFQ NDNPVVLSRS TDTASYNNNY SINYQLMSHN 180 EKVQNMPTNS HDTLVASYFE GERSADDIEG TNKEGVTYYS KPTNFEHTKA DEDNGRGKEY 240 YISRNTRSRI VWNLERRRKF SDALNKLGDK CRPKLILKLM NEPCLTLRQV ANHLQKYKAQ 300 VESIKKGRKN KLAPRMEASK FDCSVMTQLP PLVQRQQNHE ANKFIQQNHE ANKSTQQNHE 360 TNKSTQQNHE ANKTTQGGST SLSGGKRFRL IAPKPALNPR LLVSANFVNH GLIMFDHNFQ 420 HVASNYNSVP YSINKTTPEV TSYRAFDEIQ FPDIHQVDVA QQLEAMEFCG TSEGIQLMSK 480 NIALPDSTNL DNIAANFGNE GSQQQFAECD YILNVLEDNP YDLRNDFSLS DVDKYSEWLR 540 NTVLEDESGL DKFINDDAEI FPVEINQ

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MNVSIFAPNS ARCCLQPHAS SLFQSLLEAL KFTTTGLGCI ALSMIQEKGD QFDLVMANVS  60
MPDMDSFSFL HVLLKMNIAV IFMSSTMNLK VATKALAEGA CYFLQKPVSK DDLKYVWQHV  120
YRSNINIAKL THKANCVDKA KSGQEFVGFQ NDNPVVLSRS TDTASYNNNY SINYQLMSHN  180
EKVQNMPTNS HDTLVASYFE GERSADDIEG TNKEGVTYYS KPTNFEHTKA DEDNGRGKEY  240
YISRNTRSRI VWNLERRRKF SDALNKLGDK CRPKLILKLM NEPCLTLRQV ANHLQKYKAQ  300
VESIKKGRKN KLAPRMEASK FDCSVMTQLP PLVQRQQNHE ANKFIQQNHE ANKSTQQNHE  360
TNKSTQQNHE ANKTTQGGST SLSGGKRFRL IAPKPALNPR LLVSANFVNH GLIMFDHNFQ  420
HVASNYNSVP YSINKTTPEV TSYRAFDEIQ FPDIHQVDVA QQLEAMEFCG TSEGIQLMSK  480
NIALPDSTNL DNIAANFGNE GSQQQFAECD YILNVLEDNP YDLRNDFSLS DVDKYSEWLR  540
NTVLEDESGL DKFINDDAEI FPVEINQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	260	ERRRKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68210.1	1e-28	ARR-B family protein