PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538570.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 1003aa MW: 111798 Da PI: 4.8935

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538570.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2e-18	38	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_023538570.1 38 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 84 799**************************9.**********986 PP
2	Myb_DNA-binding	66.8	3.9e-21	90	136	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v++v+++G++ W+tIa++++ gR +kqc++rw+++l XP_023538570.1 90 KGPWSKEEDEIIVELVQKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 136 79****************************.***********97 PP
3	Myb_DNA-binding	47.7	3.7e-15	142	184	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_023538570.1 142 KEAWTQEEEIALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 184 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence
MESDPALCTP LDAPGDSCQN IRSIHSRRTS GPTRRSTKGQ WTAEEDEILR KAVQRFKGKN 60 WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IVELVQKYGP KKWSTIAQHL 120 PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE IALIRAHQIY GNRWAELTKF LPGRTDNAIK 180 NHWNSSVKKK LDSYLASGLL EQYQPLHRAL QSSLPKNSSS RVQSSIDDSS LRGTETEDIS 240 EVSQTSAIVA CSTTVPRTEE ECQLGEATFL KEEPISTPQC PEQYNSSLDN ITFSIPEMFG 300 ELDCYAKPPD QNFSQDCRTS PTGDNRYNLY ELPNISSLEL GRELSQSQAI GSQEVENVQH 360 QTSAGLNAST DENMARGSDR SQQMLISDYE CCRVLFSDGI NNESFPSENT SDASNMVELS 420 GYAHPLHCQS LSIEMQESRR NLSMQSYHHS RTDVLDNSSS QPFLAPRLVS ANDDTYVYTS 480 EASHLFATLE RELVANEHDG FIYTNESAES PPEDGTKDAD LQKQQGSNDP SKLVPVNTFS 540 SEPKTAQSFP SFSERENTQS DQQDVGALCY EPPRFPSLDV PFLSCDLVAP STSDMQQEYS 600 PLGIRQLMMS SMNCLTPFRL WNSPSRDDSP DAVLKSAAKT FTNTPSILKK RHREFFSPLS 660 EKQRDKKQEI DIGISRTSHP TSNSRDSEDK ENIIPVEEGR QEKQSDGSNI SLSCSFQENK 720 RQELDNAVKT EGVDTVGQTV QPPSRILVEC DMNDSLLYST DHDGVRADTN RGSSEEISES 780 QCRTSTALQD LDFPSKLSDD QCTRANCSIA NETSHGSHPP TASPEIIGDD ASKEPSIETL 840 FGGTPFKRSI ESPSAWKSPW FINSFLFGSR MDSDVAMEEV GFFMSPGDRS YDAIGLMKQV 900 GEHTAAACAN AQEVLGDETP QSLLKGERRK YENRIKDKSP PTNSRQGVAH STLAPDILKE 960 RRILDFSECG TPGKGTENGK SSSASATARS FSSPSSYLLK GCR

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence

MESDPALCTP LDAPGDSCQN IRSIHSRRTS GPTRRSTKGQ WTAEEDEILR KAVQRFKGKN  60
WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IVELVQKYGP KKWSTIAQHL  120
PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE IALIRAHQIY GNRWAELTKF LPGRTDNAIK  180
NHWNSSVKKK LDSYLASGLL EQYQPLHRAL QSSLPKNSSS RVQSSIDDSS LRGTETEDIS  240
EVSQTSAIVA CSTTVPRTEE ECQLGEATFL KEEPISTPQC PEQYNSSLDN ITFSIPEMFG  300
ELDCYAKPPD QNFSQDCRTS PTGDNRYNLY ELPNISSLEL GRELSQSQAI GSQEVENVQH  360
QTSAGLNAST DENMARGSDR SQQMLISDYE CCRVLFSDGI NNESFPSENT SDASNMVELS  420
GYAHPLHCQS LSIEMQESRR NLSMQSYHHS RTDVLDNSSS QPFLAPRLVS ANDDTYVYTS  480
EASHLFATLE RELVANEHDG FIYTNESAES PPEDGTKDAD LQKQQGSNDP SKLVPVNTFS  540
SEPKTAQSFP SFSERENTQS DQQDVGALCY EPPRFPSLDV PFLSCDLVAP STSDMQQEYS  600
PLGIRQLMMS SMNCLTPFRL WNSPSRDDSP DAVLKSAAKT FTNTPSILKK RHREFFSPLS  660
EKQRDKKQEI DIGISRTSHP TSNSRDSEDK ENIIPVEEGR QEKQSDGSNI SLSCSFQENK  720
RQELDNAVKT EGVDTVGQTV QPPSRILVEC DMNDSLLYST DHDGVRADTN RGSSEEISES  780
QCRTSTALQD LDFPSKLSDD QCTRANCSIA NETSHGSHPP TASPEIIGDD ASKEPSIETL  840
FGGTPFKRSI ESPSAWKSPW FINSFLFGSR MDSDVAMEEV GFFMSPGDRS YDAIGLMKQV  900
GEHTAAACAN AQEVLGDETP QSLLKGERRK YENRIKDKSP PTNSRQGVAH STLAPDILKE  960
RRILDFSECG TPGKGTENGK SSSASATARS FSSPSSYLLK GCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	0.0	MYB family protein