PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538540.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

DBB

Protein Properties

Length: 274aa MW: 30595.8 Da PI: 6.766

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538540.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.4	2.5e-07	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C +++H H++vpl XP_023538540.1 4 QCNVCEMAEATVLCCADEAALCWACDENIHAAnklaskHQRVPL 47 7****99*******************66899999999986 PP
2	zf-B_box	27.6	5.9e-09	52	94	1	37
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 s++++C+ ++e +fC +++ llC++C +++H H XP_023538540.1 52 SQMPRCDICQEASGYIFCLEDRALLCRKCDVAIHTAntcvtgH 94 689*******************************554555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MKIQCNVCEM AEATVLCCAD EAALCWACDE NIHAANKLAS KHQRVPLSGS SSQMPRCDIC 60 QEASGYIFCL EDRALLCRKC DVAIHTANTC VTGHQRFLLT GVKVALEPTD PIPCSSIANS 120 HSREISTKTK VRPPSDKEFS MPSSGEFSRS LSVQGGSDDF MTNRTLLTGD SASGGFSHWQ 180 IDELINLTGF NQNYGFMDNG SSKLGCFSPY IHYTTFKIDR NWRETELILR HDTLVMGEFL 240 HVMILSYPHR LTAKKWTDWR LIVESLGTPI HHQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	2e-73	DBB family protein