PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538425.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Protein Properties

Length: 394aa MW: 44547.3 Da PI: 8.3518

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538425.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	66.8	3e-21	32	112	11	97
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++ lvlp+kf++ ++kk+ + t+tl+ +sg +W+v l + ++++ +++ GW+eFvka+ L+++D +vF+++g s+f v vf XP_023538425.1 32 GSEQKLVLPNKFVN--NLKKKLPSTVTLKGPSGATWDVGL--SANDDKLYFKHGWQEFVKAHSLEQNDLLVFRYNGASQF--DVLVF 112 56778******4..45566999************..*******************************99999..66666 PP
2	B3	43.2	6.9e-14	275	365	1	92
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 f+ ++ ps+v ++ l +p + ++++ + ++++++l + +++W k++++ +++ lt+GWk+F+ +n+L+e D++vF+ + ++ l XP_023538425.1 275 FKVIMRPSHVYRRFYLFIPTQWVTKNLSL--CNQDVIL-RLGNNEWPAKFSFTASRQCGGLTSGWKHFAIDNNLEEFDVCVFEPVpKTsGPVVL 365 778899******************544..4445664.457799999999977777777*********************76333333334 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MDKVSDSSNK WAEDIYWSHF QFTHFYQILA GGSEQKLVLP NKFVNNLKKK LPSTVTLKGP 60 SGATWDVGLS ANDDKLYFKH GWQEFVKAHS LEQNDLLVFR YNGASQFDVL VFDWKSFCEK 120 EASYFVKICE HTNSDTGHKA KRKFGEPTLD SFDVDANNGA ECASSENNLH DDSMERMIQD 180 VVSKATNLNG QPEVFSAQPI RTIRTRRRKE TPKSAAVMTP TPAPVQLSDS DEEATPVKKI 240 GSYAEQYLSN RRAITEEDKN NALKLAEAAS SNAGFKVIMR PSHVYRRFYL FIPTQWVTKN 300 LSLCNQDVIL RLGNNEWPAK FSFTASRQCG GLTSGWKHFA IDNNLEEFDV CVFEPVPKTS 360 GPVVLEVRIF RVVEDVIPLT RVSAKSNRKL IKAN

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MDKVSDSSNK WAEDIYWSHF QFTHFYQILA GGSEQKLVLP NKFVNNLKKK LPSTVTLKGP  60
SGATWDVGLS ANDDKLYFKH GWQEFVKAHS LEQNDLLVFR YNGASQFDVL VFDWKSFCEK  120
EASYFVKICE HTNSDTGHKA KRKFGEPTLD SFDVDANNGA ECASSENNLH DDSMERMIQD  180
VVSKATNLNG QPEVFSAQPI RTIRTRRRKE TPKSAAVMTP TPAPVQLSDS DEEATPVKKI  240
GSYAEQYLSN RRAITEEDKN NALKLAEAAS SNAGFKVIMR PSHVYRRFYL FIPTQWVTKN  300
LSLCNQDVIL RLGNNEWPAK FSFTASRQCG GLTSGWKHFA IDNNLEEFDV CVFEPVPKTS  360
GPVVLEVRIF RVVEDVIPLT RVSAKSNRKL IKAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-74	B3 family protein