PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023538408.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 29102.8 Da PI: 9.1277 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.1 | 4.8e-19 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l+++v+ +G+++W++I++ ++ gR++k+c++rw + XP_023538408.1 12 KGPWSPEEDESLKRLVESYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 2.8e-18 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ XP_023538408.1 66 AFTAEEDEAILKAHAKFGNK-WATIARLLN-GRTDNAIKNHWNST 108 79******************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 268 aa Download sequence |
MDSVRKDLDR IKGPWSPEED ESLKRLVESY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 QVEHRAFTAE EDEAILKAHA KFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKSSAIGEDF 120 NDPPLKRSAS VGPGPVGFGF NPSSPSGSDL SDSSLSPPVY RPLARSGSIV NDPPTSLCLS 180 LPGSNSTSGY GSDSVASPTL KIPEATPLVG TTKESEVFSA EFLSAMQEMI KIEVKKYMSG 240 IEEKGWNVVQ SEAIGNAVVK RIGISKID |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 7e-77 | MYB family protein |