PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538356.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 930aa MW: 103484 Da PI: 6.5485

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.8	1.3e-15	6	68	34	98
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ +++ +gD+v+F + +++ +l+++++ XP_023538356.1 6 QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRVFAGDSVLFIR--DEKSQLLLGIRH 68 48999*********************************************4..466667888875 PP
2	Auxin_resp	124.6	6.8e-41	94	176	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k+ ka++++vs+GmRf+m+fete+s rr++Gt++g+sd+d+vrW+nS+Wr+L+ XP_023538356.1 94 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQ 176 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence
MQPPAQELVA RDLHDNSWTF RHIYRGQPKR HLLTTGWSVF VSTKRVFAGD SVLFIRDEKS 60 QLLLGIRHAN RQQPALSSSV ISSDSMHIGI LASAAHAAAN NSPFTIFYNP RASPSEFVIP 120 LAKYTKAMYT QVSLGMRFRM MFETEESGVR RYMGTITGIS DMDSVRWKNS QWRNLQVGWD 180 ESAAGERPNR VSIWEVEPVV TPFYICPPPF FRPKFPKQPG MPDDESDIEN AFKRAMPWFG 240 DDFGMKDTPS SIFPGLSLVQ WMSMQHNNQF PAAQSGILPS MVAPSALHGT LTNDDPSKLL 300 CFQAPVMSSS NLQFSKANQQ NQVGQLPATS WSQQQQLQQL PPQPELRQQQ QQQPKQSQQQ 360 QQTSQSALPN NGVGGANHLS NQSLQQPLVY SQLQQQQLLA GNVQSHQTSQ PSNKNSIETT 420 SLLQETQFQP QIDQQPSLVS KHHQQTQFQQ APLQLLQQSL SQRTQQLPQV QQFSQPIIPS 480 EQQLQWQLLQ KLQQQQQQQQ QQQQQQQPLV SPASPLFPPQ MIQPHPVHQQ NQQLPPLPLS 540 NQPQFNASGG SFQTEKHNSN GFSSLGLMQS QQVPITQSHN QFKPTTAIRG YSGLTDGDAP 600 SCSTSPSTNN CQVSVSNLLN KNQQGAATLG GDLVVEPATN LPQELPSKPD LRNKPEFPNS 660 KGLDQLKYKG TVPDQVEASS SGTSYCLDAG TIQQTFPLPT CLDNDVQSHP QTNIPFSNSI 720 DGWAPDTLLS RGYDSQKDLQ NLLSNYEGGV PRDTETELST AAIRSQSFGV PNLPFKPGCS 780 NDVNVNEAGA LSSGLWANHG QRMRTYTKVQ KRGSVGRCID VTRYKGYDEL RHDLARMFGI 840 EGQLEDPQRT DWKLVYVDHE NDILLVGDDP WEEFVSCVQS IKILSSSEVQ QMSLNGNLGH 900 IQAPNQACSG TDSGNAWRGQ YDDNSAASFN

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence

MQPPAQELVA RDLHDNSWTF RHIYRGQPKR HLLTTGWSVF VSTKRVFAGD SVLFIRDEKS  60
QLLLGIRHAN RQQPALSSSV ISSDSMHIGI LASAAHAAAN NSPFTIFYNP RASPSEFVIP  120
LAKYTKAMYT QVSLGMRFRM MFETEESGVR RYMGTITGIS DMDSVRWKNS QWRNLQVGWD  180
ESAAGERPNR VSIWEVEPVV TPFYICPPPF FRPKFPKQPG MPDDESDIEN AFKRAMPWFG  240
DDFGMKDTPS SIFPGLSLVQ WMSMQHNNQF PAAQSGILPS MVAPSALHGT LTNDDPSKLL  300
CFQAPVMSSS NLQFSKANQQ NQVGQLPATS WSQQQQLQQL PPQPELRQQQ QQQPKQSQQQ  360
QQTSQSALPN NGVGGANHLS NQSLQQPLVY SQLQQQQLLA GNVQSHQTSQ PSNKNSIETT  420
SLLQETQFQP QIDQQPSLVS KHHQQTQFQQ APLQLLQQSL SQRTQQLPQV QQFSQPIIPS  480
EQQLQWQLLQ KLQQQQQQQQ QQQQQQQPLV SPASPLFPPQ MIQPHPVHQQ NQQLPPLPLS  540
NQPQFNASGG SFQTEKHNSN GFSSLGLMQS QQVPITQSHN QFKPTTAIRG YSGLTDGDAP  600
SCSTSPSTNN CQVSVSNLLN KNQQGAATLG GDLVVEPATN LPQELPSKPD LRNKPEFPNS  660
KGLDQLKYKG TVPDQVEASS SGTSYCLDAG TIQQTFPLPT CLDNDVQSHP QTNIPFSNSI  720
DGWAPDTLLS RGYDSQKDLQ NLLSNYEGGV PRDTETELST AAIRSQSFGV PNLPFKPGCS  780
NDVNVNEAGA LSSGLWANHG QRMRTYTKVQ KRGSVGRCID VTRYKGYDEL RHDLARMFGI  840
EGQLEDPQRT DWKLVYVDHE NDILLVGDDP WEEFVSCVQS IKILSSSEVQ QMSLNGNLGH  900
IQAPNQACSG TDSGNAWRGQ YDDNSAASFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	1e-153	ARF family protein