PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538354.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 1090aa MW: 120978 Da PI: 6.447

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.9	3.5e-22	128	228	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ +++ +gD+v+F + +++ XP_023538354.1 128 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRVFAGDSVLFIR--DEK 219 99***************************9545444.38**********************************************4..466 PP E..EEEEE- CS B3 90 felvvkvfr 98 +l+++++ XP_023538354.1 220 SQLLLGIRH 228 667888875 PP
2	Auxin_resp	124.3	8.4e-41	254	336	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k+ ka++++vs+GmRf+m+fete+s rr++Gt++g+sd+d+vrW+nS+Wr+L+ XP_023538354.1 254 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQ 336 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1090 aa Download sequence
MKAPPNGFVP NSGEGTGERK NINSELWHAC AGPLVSLPPV GSLVVYFPQG HSEQVAASMN 60 KETDFIPNYP NLPSKLVCML HNVILHADPE TDEVYAQMTL QPVNKYEKEA LLASDIGLKQ 120 NRQPAEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDYS MQPPAQELVA RDLHDNSWTF 180 RHIYRGQPKR HLLTTGWSVF VSTKRVFAGD SVLFIRDEKS QLLLGIRHAN RQQPALSSSV 240 ISSDSMHIGI LASAAHAAAN NSPFTIFYNP RASPSEFVIP LAKYTKAMYT QVSLGMRFRM 300 MFETEESGVR RYMGTITGIS DMDSVRWKNS QWRNLQVGWD ESAAGERPNR VSIWEVEPVV 360 TPFYICPPPF FRPKFPKQPG MPDDESDIEN AFKRAMPWFG DDFGMKDTPS SIFPGLSLVQ 420 WMSMQHNNQF PAAQSGILPS MVAPSALHGT LTNDDPSKLL CFQAPVMSSS NLQFSKANQQ 480 NQVGQLPATS WSQQQQLQQL PPQPELRQQQ QQQPKQSQQQ QQTSQSALPN NGVGGANHLS 540 NQSLQQPLVY SQLQQQQLLA GNVQSHQTSQ PSNKNSIETT SLLQETQFQP QIDQQPSLVS 600 KHHQQTQFQQ APLQLLQQSL SQRTQQLPQV QQFSQPIIPS EQQLQWQLLQ KLQQQQQQQQ 660 QQQQQQQPLV SPASPLFPPQ MIQPHPVHQQ NQQLPPLPLS NQPQFNASGG SFQTEKHNSN 720 GFSSLGLMQS QQVPITQSHN QFKPTTAIRG YSGLTDGDAP SCSTSPSTNN CQVSVSNLLN 780 KNQQGAATLG GDLVVEPATN LPQELPSKPD LRNKPEFPNS KGLDQLKYKG TVPDQVEASS 840 SGTSYCLDAG TIQQTFPLPT CLDNDVQSHP QTNIPFSNSI DGWAPDTLLS RGYDSQKDLQ 900 NLLSNYEGGV PRDTETELST AAIRSQSFGV PNLPFKPGCS NDVNVNEAGA LSSGLWANHG 960 QRMRTYTKVQ KRGSVGRCID VTRYKGYDEL RHDLARMFGI EGQLEDPQRT DWKLVYVDHE 1020 NDILLVGDDP WEEFVSCVQS IKILSSSEVQ QMSLNGNLGH IQAPNQACSG TDSGNAWRGQ 1080 YDDNSAASFN

Sequence ? help Back to Top

Protein Sequence Length: 1090 aa Download sequence

MKAPPNGFVP NSGEGTGERK NINSELWHAC AGPLVSLPPV GSLVVYFPQG HSEQVAASMN  60
KETDFIPNYP NLPSKLVCML HNVILHADPE TDEVYAQMTL QPVNKYEKEA LLASDIGLKQ  120
NRQPAEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDYS MQPPAQELVA RDLHDNSWTF  180
RHIYRGQPKR HLLTTGWSVF VSTKRVFAGD SVLFIRDEKS QLLLGIRHAN RQQPALSSSV  240
ISSDSMHIGI LASAAHAAAN NSPFTIFYNP RASPSEFVIP LAKYTKAMYT QVSLGMRFRM  300
MFETEESGVR RYMGTITGIS DMDSVRWKNS QWRNLQVGWD ESAAGERPNR VSIWEVEPVV  360
TPFYICPPPF FRPKFPKQPG MPDDESDIEN AFKRAMPWFG DDFGMKDTPS SIFPGLSLVQ  420
WMSMQHNNQF PAAQSGILPS MVAPSALHGT LTNDDPSKLL CFQAPVMSSS NLQFSKANQQ  480
NQVGQLPATS WSQQQQLQQL PPQPELRQQQ QQQPKQSQQQ QQTSQSALPN NGVGGANHLS  540
NQSLQQPLVY SQLQQQQLLA GNVQSHQTSQ PSNKNSIETT SLLQETQFQP QIDQQPSLVS  600
KHHQQTQFQQ APLQLLQQSL SQRTQQLPQV QQFSQPIIPS EQQLQWQLLQ KLQQQQQQQQ  660
QQQQQQQPLV SPASPLFPPQ MIQPHPVHQQ NQQLPPLPLS NQPQFNASGG SFQTEKHNSN  720
GFSSLGLMQS QQVPITQSHN QFKPTTAIRG YSGLTDGDAP SCSTSPSTNN CQVSVSNLLN  780
KNQQGAATLG GDLVVEPATN LPQELPSKPD LRNKPEFPNS KGLDQLKYKG TVPDQVEASS  840
SGTSYCLDAG TIQQTFPLPT CLDNDVQSHP QTNIPFSNSI DGWAPDTLLS RGYDSQKDLQ  900
NLLSNYEGGV PRDTETELST AAIRSQSFGV PNLPFKPGCS NDVNVNEAGA LSSGLWANHG  960
QRMRTYTKVQ KRGSVGRCID VTRYKGYDEL RHDLARMFGI EGQLEDPQRT DWKLVYVDHE  1020
NDILLVGDDP WEEFVSCVQS IKILSSSEVQ QMSLNGNLGH IQAPNQACSG TDSGNAWRGQ  1080
YDDNSAASFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein