PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538294.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NAC

Protein Properties

Length: 367aa MW: 40748.2 Da PI: 5.208

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538294.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	36.7	1.3e-11	22	113	16	127
NAM 16 veyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfyk 110 ++ L++ +g++l++ +v+ +d y+++P++Lp + ++f+ k d ++ ++ W+ +g d +++s ++ +g + t+ +y+ XP_023538294.1 22 CRVLRRISNGDPLPE-NVLVGIDPYQCKPENLP-------EGVWFYGKCDGNS-----------NSSWRRKGGDIKLYS-DSFFTGWRATFEYYE 96 566788888888888.899999********9.......4577888877643...........356********.9999******* PP NAM 111 grapkgektdWvmheyr 127 g+ap+ +kt Wvmhey XP_023538294.1 97 GQAPHEHKTAWVMHEYW 113 **************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MTPSTGTSPA TLDLFVTEKD VCRVLRRISN GDPLPENVLV GIDPYQCKPE NLPEGVWFYG 60 KCDGNSNSSW RRKGGDIKLY SDSFFTGWRA TFEYYEGQAP HEHKTAWVMH EYWTTDSGTS 120 GNSKQRETSS LYKLFVGDEQ FQSPEKIQKI ELSTVPNSES INQNHQLVVP DGSNNMENGS 180 TNQPEMREVI RSDMDYISRG DFLEIQDLDT PASSSSSSEN SSRVSFTSDE YFDPMALLRD 240 IDRDNNFDTV QRDAACIRSS APIRLRTEVV HQGGSESLVD TNGSRLPGEE SPKPESIVPG 300 SGCKEPELLK GEASSSCQNE VVAKGKEAAA AAAAAAAMDG GKKKKKKKSI SRMKKIQKKY 360 FCFFFSF

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MTPSTGTSPA TLDLFVTEKD VCRVLRRISN GDPLPENVLV GIDPYQCKPE NLPEGVWFYG  60
KCDGNSNSSW RRKGGDIKLY SDSFFTGWRA TFEYYEGQAP HEHKTAWVMH EYWTTDSGTS  120
GNSKQRETSS LYKLFVGDEQ FQSPEKIQKI ELSTVPNSES INQNHQLVVP DGSNNMENGS  180
TNQPEMREVI RSDMDYISRG DFLEIQDLDT PASSSSSSEN SSRVSFTSDE YFDPMALLRD  240
IDRDNNFDTV QRDAACIRSS APIRLRTEVV HQGGSESLVD TNGSRLPGEE SPKPESIVPG  300
SGCKEPELLK GEASSSCQNE VVAKGKEAAA AAAAAAAMDG GKKKKKKKSI SRMKKIQKKY  360
FCFFFSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	342	348	KKKKKKK
2	343	355	KKKKKKSISRMKK
3	344	356	KKKKKKSISRMKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-11	NAC family protein