PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538199.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 419aa MW: 44381.5 Da PI: 8.3819

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538199.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.7e-12	227	272	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_023538199.1 227 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 272 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MRLTNSLPDR HSNRRNRPPE TDASQLHHHQ NHLQTSHLHP SSFSSDDFLD QILSSIPLPW 60 ELPTGLPNPH SNLPPQPPQI SRNSDNAAFQ IGDTTPAAKM AMAMLHQQLL TTAADSSLLT 120 LPGNDVVEVE GSPSFKCPNP IIVDGSVNPS LFNEFTGFLN ASGSSHSHNQ NQSQGNSTST 180 SQKQSFGAPV SANTTPPVGT GSGGGASAAA QPRQRVRARR GQATDPHSIA ERLRRERIAE 240 RMKALQELVP NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGATASL PSQPVADMSS 300 HSEGGMDCNQ SNGNGGAARQ AFAGAPASND TMTVTEHQVV KLMEKDMGSA MQYLQGKGLC 360 LMPISLATAI STATCHSRPV TASRGGGDRP TSPSLSALTV QSTALGNGTV KDKASISRP

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MRLTNSLPDR HSNRRNRPPE TDASQLHHHQ NHLQTSHLHP SSFSSDDFLD QILSSIPLPW  60
ELPTGLPNPH SNLPPQPPQI SRNSDNAAFQ IGDTTPAAKM AMAMLHQQLL TTAADSSLLT  120
LPGNDVVEVE GSPSFKCPNP IIVDGSVNPS LFNEFTGFLN ASGSSHSHNQ NQSQGNSTST  180
SQKQSFGAPV SANTTPPVGT GSGGGASAAA QPRQRVRARR GQATDPHSIA ERLRRERIAE  240
RMKALQELVP NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGATASL PSQPVADMSS  300
HSEGGMDCNQ SNGNGGAARQ AFAGAPASND TMTVTEHQVV KLMEKDMGSA MQYLQGKGLC  360
LMPISLATAI STATCHSRPV TASRGGGDRP TSPSLSALTV QSTALGNGTV KDKASISRP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	237	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-60	bHLH family protein