PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023537893.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family bHLH
Protein Properties Length: 271aa    MW: 29828.2 Da    PI: 4.8147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023537893.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.1e-111952351055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  XP_023537893.1 195 RKRRERINERLKMLQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 235
                     9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MEALGAFTDG EWDSFTAIFS SLQELDQSLI PTELPLPNNG ASELPNNTWF YSLDAFDPNF  60
QSSVQQDMSC SSCTPVWIDQ VQNCLAATAE ACDHGSQPPQ LVDGNEPIAM KRKDKNRELS  120
SNQKKKTRIS GDGQKKKTQK KTEEIVEDAG VSEGQSSSSE EEGHGGSATT SDGGMNGKSR  180
ASRGSATDPQ SLYARKRRER INERLKMLQK LVPNGTKVDI STMLEEAVHY VKFLQLQIKL  240
LSSDDLWMFA PLAYNGMDLG LHQSLSPFLS N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111126KRKDKNRELSSNQKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.17e-53bHLH family protein