PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023537829.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25318.8 Da PI: 6.5289 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.4 | 8.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+++fs tgkl+e+ss XP_023537829.1 9 KKISNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALLVFSATGKLFEFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 53.4 | 1.1e-18 | 89 | 170 | 17 | 98 |
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +a+L ke+ + +++Rh+ GedL+ L+l++L+qLe Le +l ++ ++K++ ++++i+ l k +l een++L++++ XP_023537829.1 89 ENSSHARLTKEVADMSHQLRHMRGEDLQGLNLEDLKQLEGVLEVGLDRVLQTKERKIMNEINALELKGARLMEENRTLNRQM 170 566789************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MAREKIKIKK ISNLTARQVT FSKRRRGLFK KAEELSVLCD AEVALLVFSA TGKLFEFSSS 60 SVKDVITRYN LHSSNLGELE DPSLDLQLEN SSHARLTKEV ADMSHQLRHM RGEDLQGLNL 120 EDLKQLEGVL EVGLDRVLQT KERKIMNEIN ALELKGARLM EENRTLNRQM IRLSNQRRPL 180 LVVSDVPVPE EGVSSDSAAN VYSCNSGPPA DDDSSDTSLK LGLACPN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-90 | MIKC_MADS family protein |