PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023537369.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 1074aa MW: 118513 Da PI: 6.6093

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023537369.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.4	2.4e-22	134	235	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ a+++ +++++ ++l+ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_023537369.1 134 FCKTLTASDTSTHGGFSVPRRAADKIfppldfSMQPPA-QELVAKDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDEK 225 99***************************9445444.38********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_023537369.1 226 QQLLLGIRRA 235 889**997 PP
2	Auxin_resp	119.5	2.6e-39	260	343	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW++S+Wr+L+ XP_023537369.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSaNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQ 343 79*******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1074 aa Download sequence
MKTPANGVAS SAAAPNSCEG GLEKKIINPE LWQACAGPLV NLPPAGYHVV YFPQGHSEQV 60 AASLKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP SFDKDALLRS 120 DLALKSNKPQ PEFFCKTLTA SDTSTHGGFS VPRRAADKIF PPLDFSMQPP AQELVAKDLH 180 DTVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLLAGDSVLF IRDEKQQLLL GIRRANRQPT 240 NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVSANQIS 300 LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKGSQWR NLQVGWDEST GGERRNRVSI 360 WEIEPVIAPF FICPPPFFRS KRPRQPGMPD DESSDLDSIF KRTMFGDDFC MKDPQGYPGL 420 NLVQWMNMQN PSLSNMQPNY MHSFSGSMLP NLGGVDISRQ LGMSNAQNPQ SNNIQFNAQR 480 LLPQAQQLDQ LPKIPSTMNS MASVVQPPQQ FDDISQQTRQ NVVTSQIQSQ IMQQPHANGI 540 LQQQTSLQNQ QLQRSLPQNM LMQQHQQILG QNQQQNMNQP PIPDQSNHPL QMSDNQIQMQ 600 MLQKFQQQQQ SLLAQQSVLQ PAQLAQLPEQ QSFSISMSTN QTMDVPHSAP AAGPPPSAQQ 660 APKSHSSNQH LQPKFPQLQQ QPHDMSRPMG HNNQFSAATS SVITGAAGAG QSGITDDIPS 720 CSTSPSTNNS PSLVQPVTNG RLHRTTGLVD DVAQSAATIF STNTLDSISP NANLVKNIPH 780 KAAVKPSLNI SKNQSHGVLT QQTFLTGAVP QTEFLDTSSS TTSACLSQND AQLQQNNIMS 840 FNSQPMLFRD GSQDLEPPTD LHNIPYGTNV DGQLVAHLNS DPLMNKGIGG LGKDFSNNFS 900 SGDMLATYDA QKDPQQEISS SIVSQSFGIP DMTFNSMDST INDSSFLNRN QWAPPPPFQR 960 MRTYTKVYKR GAVGRSIDIT RYSGYDELKQ DLARRFGIEG QLEDRQKIGW KLVYVDHEND 1020 VLLVGDDPWE DFVNCVRSIK ILSPQEVQQM SLDGDFGNGG LPNQACSSSD GGNA

Sequence ? help Back to Top

Protein Sequence Length: 1074 aa Download sequence

MKTPANGVAS SAAAPNSCEG GLEKKIINPE LWQACAGPLV NLPPAGYHVV YFPQGHSEQV  60
AASLKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP SFDKDALLRS  120
DLALKSNKPQ PEFFCKTLTA SDTSTHGGFS VPRRAADKIF PPLDFSMQPP AQELVAKDLH  180
DTVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLLAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVSANQIS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKGSQWR NLQVGWDEST GGERRNRVSI  360
WEIEPVIAPF FICPPPFFRS KRPRQPGMPD DESSDLDSIF KRTMFGDDFC MKDPQGYPGL  420
NLVQWMNMQN PSLSNMQPNY MHSFSGSMLP NLGGVDISRQ LGMSNAQNPQ SNNIQFNAQR  480
LLPQAQQLDQ LPKIPSTMNS MASVVQPPQQ FDDISQQTRQ NVVTSQIQSQ IMQQPHANGI  540
LQQQTSLQNQ QLQRSLPQNM LMQQHQQILG QNQQQNMNQP PIPDQSNHPL QMSDNQIQMQ  600
MLQKFQQQQQ SLLAQQSVLQ PAQLAQLPEQ QSFSISMSTN QTMDVPHSAP AAGPPPSAQQ  660
APKSHSSNQH LQPKFPQLQQ QPHDMSRPMG HNNQFSAATS SVITGAAGAG QSGITDDIPS  720
CSTSPSTNNS PSLVQPVTNG RLHRTTGLVD DVAQSAATIF STNTLDSISP NANLVKNIPH  780
KAAVKPSLNI SKNQSHGVLT QQTFLTGAVP QTEFLDTSSS TTSACLSQND AQLQQNNIMS  840
FNSQPMLFRD GSQDLEPPTD LHNIPYGTNV DGQLVAHLNS DPLMNKGIGG LGKDFSNNFS  900
SGDMLATYDA QKDPQQEISS SIVSQSFGIP DMTFNSMDST INDSSFLNRN QWAPPPPFQR  960
MRTYTKVYKR GAVGRSIDIT RYSGYDELKQ DLARRFGIEG QLEDRQKIGW KLVYVDHEND  1020
VLLVGDDPWE DFVNCVRSIK ILSPQEVQQM SLDGDFGNGG LPNQACSSSD GGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein