PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023537345.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family BBR-BPC
Protein Properties Length: 345aa    MW: 38622.6 Da    PI: 9.9409
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023537345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind391.11.6e-11913451301
       GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                     mdd+g+re  r+k+ +y++a  + + +++   +q+m+++aerda+++ernlalsekkaa+aerdma+lqrd+a+aern+al+erdn++++l+++e
  XP_023537345.1   1 MDDSGHREngRHKAeQYKSAqgQWMMQHQpsMKQIMAIMAERDAAVQERNLALSEKKAAIAERDMAYLQRDAAIAERNNALLERDNAIATLQYRE 95 
                     9*****999*****9***6656445545422469************************************************************* PP

       GAGA_bind  89 nsla...salpvgvqvlsgtksidslqqlse........pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172
                     nsl+    ++p+g+q+ +g+k+i++ qq+++        p++++s+++ re + ++a p+++++ ++++k +++  +r+k+  +k+ ++++kk +
  XP_023537345.1  96 NSLTnnnLSCPPGCQIARGVKHIHHPQQQQQqqhthhhvPHMNESTYNSRELHANDACPVSSQVASESTKVRRN--KRTKED-NKTVTAPNKKVS 187
                     *99877789***************99885555678899999******************998766655544444..333322.233334444455 PP

       GAGA_bind 173 kskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttt 238
                     k  +kvk+e +d +                             sk+++k +dl+ln+v++Dest+P+P+CsCtG+ rqCYkWGnGGWqSaCCttt
  XP_023537345.1 188 KAPRKVKREAEDLNkimlgksqewkdgigivsggddlnkhlvvSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTT 282
                     56677777777744488899999************************************************************************ PP

       GAGA_bind 239 iSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     +S+yPLP+++++r+aR++grKmS++af+klL++L+aeG+dls pvDLk+hWAkHGtn+++ti+
  XP_023537345.1 283 VSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLTAEGHDLSAPVDLKNHWAKHGTNRYITIK 345
                     **************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MDDSGHRENG RHKAEQYKSA QGQWMMQHQP SMKQIMAIMA ERDAAVQERN LALSEKKAAI  60
AERDMAYLQR DAAIAERNNA LLERDNAIAT LQYRENSLTN NNLSCPPGCQ IARGVKHIHH  120
PQQQQQQQHT HHHVPHMNES TYNSRELHAN DACPVSSQVA SESTKVRRNK RTKEDNKTVT  180
APNKKVSKAP RKVKREAEDL NKIMLGKSQE WKDGIGIVSG GDDLNKHLVV SKSDWKGQDL  240
GLNQVAFDES TMPAPICSCT GVIRQCYKWG NGGWQSACCT TTVSMYPLPA VPNKRHARVG  300
GRKMSGSAFN KLLSRLTAEG HDLSAPVDLK NHWAKHGTNR YITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-160BBR-BPC family protein