PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023537273.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 948aa MW: 104235 Da PI: 6.0276

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023537273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	9.1e-06	550	570	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++ + G C+ Gd+CkF+H+ XP_023537273.1 550 YCRHYIK-GRCHEGDKCKFSHD 570 6****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 948 aa Download sequence
MEDARIEAPK LVESKLMFPP HRRSHLKSDT YRTLVRILSP FCGSDDVSLA TEFDPQQLRH 60 AYTSHLKQST VESSGQQVDG DFVRPEIGDS AIEKVTVVED GMGMDSLEEG CFHESEAKMN 120 VIKDMSIVEG SDNAGAEREL QGACSQENHC VHEESHRDEL EAANMVEGNK VLIDDNSSNK 180 TRSSDQTNCG NEQISPKKFQ EEIVEHQQVM AEQDAVNKVQ NLSMTIFSSQ GDNIGEASEH 240 KDNQENRLPI VDKGMYQLTE TQPKESKPEG IVCEPYLEME KSHVSSFEVM EVEDGDQCSE 300 KVCGVDLSCL DKEMPFWANE LSKNSEDWAV SMEVDASEVG HKIVSEDIQM EKCLVENEDI 360 EEGEICGDST HEISEDPAVL DEKHSSIQAN GEAKKPDSLF SDMVENATHE NKEESKQKKS 420 NLDACKHGSM DSVKMVTTII EDQNDFMLEE AGYTVKDSRH NRDADSFTAR ISNQVPRGQV 480 PSECATGRKE IVSTEKETGS CNKKKRGSCT EGRKERKKIQ KRKKRAEKNR KLGVKRLKLL 540 PVTVPKPVVY CRHYIKGRCH EGDKCKFSHD TTPATKSVPC SYFARHSCMK GDDCPFDHQL 600 FKYPCSNFVS KGSCPRGDTC MFSHKILPQE QSNMQNLKTQ SKPPVIPDSL DSQRKSNISG 660 GTKQKPVTVT VLSYAGASCN RTPQGESLLK KTTGPLPTGI SFLSFGKSPD HSSQVKNNDV 720 ERRNSLTQSG LCSVENSSEI SRKIQPQSAP EGISILSFGR TSLRSNSENL ATPSSYNAAT 780 ITSGNQTPCA SKTGHDPSEL ARKVQTTTSK PTNFFSPVGN CTSNSKVSSD LSVPMKESMY 840 VKPEGLSTIF SRLPGTSMTT GQYSDSSASS MNNKGTPKSA QKALLSTLAF AAKYESMNKG 900 KSSDSAGSKD GNKEDGNENI SGSLRSDQAK ASKLLDFLLG VGSKSNLK

Sequence ? help Back to Top

Protein Sequence Length: 948 aa Download sequence

MEDARIEAPK LVESKLMFPP HRRSHLKSDT YRTLVRILSP FCGSDDVSLA TEFDPQQLRH  60
AYTSHLKQST VESSGQQVDG DFVRPEIGDS AIEKVTVVED GMGMDSLEEG CFHESEAKMN  120
VIKDMSIVEG SDNAGAEREL QGACSQENHC VHEESHRDEL EAANMVEGNK VLIDDNSSNK  180
TRSSDQTNCG NEQISPKKFQ EEIVEHQQVM AEQDAVNKVQ NLSMTIFSSQ GDNIGEASEH  240
KDNQENRLPI VDKGMYQLTE TQPKESKPEG IVCEPYLEME KSHVSSFEVM EVEDGDQCSE  300
KVCGVDLSCL DKEMPFWANE LSKNSEDWAV SMEVDASEVG HKIVSEDIQM EKCLVENEDI  360
EEGEICGDST HEISEDPAVL DEKHSSIQAN GEAKKPDSLF SDMVENATHE NKEESKQKKS  420
NLDACKHGSM DSVKMVTTII EDQNDFMLEE AGYTVKDSRH NRDADSFTAR ISNQVPRGQV  480
PSECATGRKE IVSTEKETGS CNKKKRGSCT EGRKERKKIQ KRKKRAEKNR KLGVKRLKLL  540
PVTVPKPVVY CRHYIKGRCH EGDKCKFSHD TTPATKSVPC SYFARHSCMK GDDCPFDHQL  600
FKYPCSNFVS KGSCPRGDTC MFSHKILPQE QSNMQNLKTQ SKPPVIPDSL DSQRKSNISG  660
GTKQKPVTVT VLSYAGASCN RTPQGESLLK KTTGPLPTGI SFLSFGKSPD HSSQVKNNDV  720
ERRNSLTQSG LCSVENSSEI SRKIQPQSAP EGISILSFGR TSLRSNSENL ATPSSYNAAT  780
ITSGNQTPCA SKTGHDPSEL ARKVQTTTSK PTNFFSPVGN CTSNSKVSSD LSVPMKESMY  840
VKPEGLSTIF SRLPGTSMTT GQYSDSSASS MNNKGTPKSA QKALLSTLAF AAKYESMNKG  900
KSSDSAGSKD GNKEDGNENI SGSLRSDQAK ASKLLDFLLG VGSKSNLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	503	525	KKKRGSCTEGRKERKKIQKRKKR
2	503	528	KKKRGSCTEGRKERKKIQKRKKRAEK
3	504	526	KKKRGSCTEGRKERKKIQKRKKR
4	516	538	RKKIQKRKKRAEKNRKLGVKRLK