PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023536040.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 343aa    MW: 37718.2 Da    PI: 9.0858
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023536040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.6e-10193219127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     y+t +Cr +  +G C++G +C+FaHg+
  XP_023536040.1 193 YRTDICRSWEDSGSCRFGHKCQFAHGK 219
                     89***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MEDRQGKRSS KAAIIKGLNA TVRPIKIQMD NHLVIGGTGH YHQETNSKIP TILDRYAEKH  60
ERSTPIVSYF RSRSPVVGKL PSVGDTFSTP VADVINANYR SSIINHFASS TSGSSSFGSR  120
RGGSSLSPLS AIENLETTPV RSPQIYGTPL KVHEEVIVMD EILISSVHGG AKTLKSALDS  180
GSGGGSSLSK NQYRTDICRS WEDSGSCRFG HKCQFAHGKE ELRPVHLPLK TKPKFGEPYL  240
THGLKSRNNH SLTGIAATTQ SNSLDITFKT ELSRRGHSIN SIHNLNTDWS PEDDDIEVVV  300
PETKSTRGDV DQHIHEVLYG STTERTKKRL LVFVQLCSSQ QEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-08C3H family protein