PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534537.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 486aa MW: 56276.9 Da PI: 5.44

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534537.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.1	2.4e-28	37	121	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+ aL+++r++m++ +r+++lk+plWeevs+k++e g++r++k+Ckek+en+ k++k+++++++++ ++ ++++yf+qlea XP_023534537.1 37 RWPREETIALLKVRSSMDTVFRDASLKAPLWEEVSRKLAELGYKRNAKKCKEKFENIYKYHKRTRDIRSGK--PNGKNYRYFEQLEA 121 8******************************************************************95..66679*****85 PP
2	trihelix	100.5	1.4e-31	317	402	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi++r++++ +++++ k+plWee s++m++ g+ rs+k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a XP_023534537.1 317 RWPKEEIDALIQLRTNLQMKYQENGPKGPLWEEMSQAMKKLGYDRSAKRCKEKWENINKYFKRVKERNKKR-PEDSKTCPYFQQLDA 402 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MLEISPSPEN SAAAEEDGAA SSAGFKEESD RSWAGNRWPR EETIALLKVR SSMDTVFRDA 60 SLKAPLWEEV SRKLAELGYK RNAKKCKEKF ENIYKYHKRT RDIRSGKPNG KNYRYFEQLE 120 ALDNHPLLPS QADSMEEIPN NIVHNPIPCS IVNPGSNFVE TTTTSISTST TSCSSKESGG 180 ARKKKRKFVE FFERLMNEVI EKQEKLQRKF MEALEKCEEE RLAREEEWRV QELARIKKER 240 ERLNQERSIA AAKDAALLSF LKMFSEQMGT VPFPESLILM ENLTEKQDDG NVERNTSNQE 300 NNNSNNGNSN QISSSSRWPK EEIDALIQLR TNLQMKYQEN GPKGPLWEEM SQAMKKLGYD 360 RSAKRCKEKW ENINKYFKRV KERNKKRPED SKTCPYFQQL DALYKLKSKK VVVVENPTKP 420 NYELKPEELL MHMMEGQEEE SHQQPESATD NGEAQNTDQN QDDDEHEDED YQIVAKNNSN 480 EMEVGI

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MLEISPSPEN SAAAEEDGAA SSAGFKEESD RSWAGNRWPR EETIALLKVR SSMDTVFRDA  60
SLKAPLWEEV SRKLAELGYK RNAKKCKEKF ENIYKYHKRT RDIRSGKPNG KNYRYFEQLE  120
ALDNHPLLPS QADSMEEIPN NIVHNPIPCS IVNPGSNFVE TTTTSISTST TSCSSKESGG  180
ARKKKRKFVE FFERLMNEVI EKQEKLQRKF MEALEKCEEE RLAREEEWRV QELARIKKER  240
ERLNQERSIA AAKDAALLSF LKMFSEQMGT VPFPESLILM ENLTEKQDDG NVERNTSNQE  300
NNNSNNGNSN QISSSSRWPK EEIDALIQLR TNLQMKYQEN GPKGPLWEEM SQAMKKLGYD  360
RSAKRCKEKW ENINKYFKRV KERNKKRPED SKTCPYFQQL DALYKLKSKK VVVVENPTKP  420
NYELKPEELL MHMMEGQEEE SHQQPESATD NGEAQNTDQN QDDDEHEDED YQIVAKNNSN  480
EMEVGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	88	KRNAKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-60	Trihelix family protein