PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023534500.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family TCP
Protein Properties Length: 291aa    MW: 33177.8 Da    PI: 9.8463
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023534500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP137.41.2e-421212642131
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssa........sec...eaessss 80 
                     +gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+s+tieWLl ++  aik+l  +     +   +        s c   +++ s+ 
  XP_023534500.1 121 TGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSlannsN---NnsghryggSVCcgsTEGVSEM 212
                     79**************************************************************865431...1334566665666542222222 PP

             TCP  81 sasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmr 131
                       +n++ g aak+ a  + +++k++ + + + +esr +ararar+rt  k+ 
  XP_023534500.1 213 IRGNNGGGGAAKEGAfMGTPKHKQSRALRRVGRESRDRARARARQRTMLKKT 264
                     2234444477777777999999999999******************988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MNPNMFGSNN TTQTNHIALQ HQEQHEQNLY LHFPHPFLDH DDLFLTHILS SQQFFIGADC  60
WGEREREQER EQEREQEQEQ EQDQDHDQTK QNSEKPRIEV VKQKKKKCSG NRKNGSSGKK  120
TGKKDRHSKI YTAQGPRDRR MRLSLQIARK FFDLQDMLGF DKASNTIEWL LSNSTSAIKD  180
LQHSLANNSN NNSGHRYGGS VCCGSTEGVS EMIRGNNGGG GAAKEGAFMG TPKHKQSRAL  240
RRVGRESRDR ARARARQRTM LKKTEQPISN LQDVSSVVDD LSDFASIRSI L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104124KKKKCSGNRKNGSSGKKTGKK
2248258RDRARARARQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-28TCP family protein