PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023534377.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 656aa    MW: 72671.7 Da    PI: 8.1076
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023534377.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23169270199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       ++ +  s++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv++++L +gD v+F   + +
  XP_023534377.1 169 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQLRP--SQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSLFVSQKNLISGDAVLFL--RGE 259
                     99****************************9887775..458************************************************..449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+++++r+
  XP_023534377.1 260 NGELRLGIRRA 270
                     9999****996 PP
2Auxin_resp121.37.4e-40295376182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++a+stks+F+v+YnPra +++Fv++++k++k+++++v+vG+Rfkm+fe++ds+err+ G+v g+ d+dp+rWpnSkWr+L
  XP_023534377.1 295 VVKAISTKSIFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVLGIGDMDPLRWPNSKWRCL 376
                     6899*****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    
MEIDLNLTAS DVGKNAYCNG NCEEGRCNYC LSSSTSSCSS NSSPALVSSS TYLELWHACA  60
GPLTSLPKKG NVVVYFPQGH LEQIASASPF SPMEMRTFDL QPQILCRVIN VHLLANKEND  120
EVYTQLTLLP LPEFLGTGLE GKELEELALN GADGDGSGVS PTRSTPHMFC KTLTASDTST  180
HGGFSVPRRA AEDCFPPLDY TQLRPSQELI AKDLHGVEWR FKHIYRGQPR RHLLTTGWSL  240
FVSQKNLISG DAVLFLRGEN GELRLGIRRA VRPRNGLPDS IVGNQNSCAD DLARVVKAIS  300
TKSIFDVFYN PRAYHAQFVI SCQKYVKSIN NPVTVGTRFK MRFEMDDSPE RRFNGVVLGI  360
GDMDPLRWPN SKWRCLTVRW DKDGDHQERV SPWEIEPSVS LPPLSVQSSP RLKKLRTSLQ  420
AAPPNAFAVG RGGFMDFEDS IRSSKVLQGQ ENVGIVSPFY GRDTTKRSLE FEVRSSAHQA  480
SGGAEKYRGD YVKVHPNSSF TGFMESERFL KVLQGQEICS LRPQTRKPEH CLGVWGKFNL  540
SDNSFNTFHS PNSSFYHMAS NGAQNMYFPR SEFYSTGQAA AVMRSNDGNF PRESALFSPS  600
VDASVMSTTS GSNIKNSKDE NVNENSTGCR LFGFSLTTET ATNMQSSGKR SCTKSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein