PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534095.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 436aa MW: 49638.8 Da PI: 6.7359

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534095.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.8	5e-22	120	214	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li+++ ++++ ++g +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d++ XP_023534095.1 120 KWTDDIVRLLIAVVACVGDDGEAGMgskrksgilQKKGKWKMVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMDSM 214 7************8888888763445667888********************************************669999999888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MDSSGLGGGF LSGNGGLLDL ESPIRRHQQT QLINTSLTHR HHLKMMNTLE SDHQSVGIMD 60 TKRLGHKDLS MTFTKGKAIA SGGVTNNSNT SEEDEPSFTE DGECTDFLKG KKGSPWQRMK 120 WTDDIVRLLI AVVACVGDDG EAGMGSKRKS GILQKKGKWK MVSKIMISKG CHVSPQQCED 180 KFNDLNKRYK RLNDILGRGT SCRVVENPAL MDSMPHLSSK VKDDVRKILS SKHLFYKEMC 240 AYHNGQTIPG CQDVDFQGKI LPVVNFSKGN NESEEADDSD SDSDESDNED DHYPEENRLW 300 PAESRGRDKA SADDGPLWSI TSAQNEFEGQ IDVFLSDPTK PQWERRDWIK KQMLQLQEQC 360 VSFQAQSFEL EKQRFKWLRY CSKKSRDLER MRLENERMKI DNERRVLQLK QKEMELEFKR 420 SDSSFGPTLG IDRIQG

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MDSSGLGGGF LSGNGGLLDL ESPIRRHQQT QLINTSLTHR HHLKMMNTLE SDHQSVGIMD  60
TKRLGHKDLS MTFTKGKAIA SGGVTNNSNT SEEDEPSFTE DGECTDFLKG KKGSPWQRMK  120
WTDDIVRLLI AVVACVGDDG EAGMGSKRKS GILQKKGKWK MVSKIMISKG CHVSPQQCED  180
KFNDLNKRYK RLNDILGRGT SCRVVENPAL MDSMPHLSSK VKDDVRKILS SKHLFYKEMC  240
AYHNGQTIPG CQDVDFQGKI LPVVNFSKGN NESEEADDSD SDSDESDNED DHYPEENRLW  300
PAESRGRDKA SADDGPLWSI TSAQNEFEGQ IDVFLSDPTK PQWERRDWIK KQMLQLQEQC  360
VSFQAQSFEL EKQRFKWLRY CSKKSRDLER MRLENERMKI DNERRVLQLK QKEMELEFKR  420
SDSSFGPTLG IDRIQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	7e-72	Trihelix family protein