PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023533993.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family Trihelix
Protein Properties Length: 528aa    MW: 61009.2 Da    PI: 7.739
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023533993.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix483.2e-15114189181
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                     +W+++e laL+++r+++++ + ++      We+vs+k+ e gf+r++++Ckek+e+  +++  i+ + ++ +++++ + p+
  XP_023533993.1 114 QWSNDELLALLTIRSNIDNCFHES-----TWEHVSRKLGEVGFRRTAEKCKEKFEEETRYFNHINYHPNQDRDRDRDHLPL 189
                     7******************99998.....9***********************************9999988777776666 PP
2trihelix91.96.5e-29409496186
        trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++evlaL+++r ++  +  +   ++ k+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcpyf+ql 
  XP_023533993.1 409 RWPRDEVLALVNVRCSLYGNGVSdrdQSGKAPLWERISQGMLQMGYKRSAKRCKEKWENINKYFRKTKDVNKKR-ALDSRTCPYFHQLS 496
                     8*************9877666531225799*******************************************8.8999********95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MFEGSVSEQL HQFLTPRTPP PPPSPPPPPP PPNPNSLPLP LNFALHSPNF NFHPFDSYNS  60
TTTHQIYLHH DLFHQKDDET RTTTTGNLQV AMDLDVGRSI LMDDHHHHNH HHRQWSNDEL  120
LALLTIRSNI DNCFHESTWE HVSRKLGEVG FRRTAEKCKE KFEEETRYFN HINYHPNQDR  180
DRDRDHLPLI HTENGKPDDG KDDIVVPEVQ EGSKNDETIA SKKRKRKTKT KFELLKGYCE  240
EIVKNMMIQQ EEIHSKLLDD MLKREEEKIA KEECWKKQQM ERLHKELEVM AYEQAIASDR  300
QATIIQILNQ ITNSSTFSSS NSQKELQNLL KTLNYNHNNL PNSPSSSSLI QTHSSPNKEH  360
PQIDPKNPKN PCLSTQILAP QDPNSLINHS NPPPSSPTSP KPRDDLGKRW PRDEVLALVN  420
VRCSLYGNGV SDRDQSGKAP LWERISQGML QMGYKRSAKR CKEKWENINK YFRKTKDVNK  480
KRALDSRTCP YFHQLSTLYN QGGGNEHPEK CSIVSSENRS NQSKIIEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227KKRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.12e-71Trihelix family protein