PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023533366.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 362aa    MW: 41314.4 Da    PI: 4.8443
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023533366.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.4e-0689112226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C  G +CkF+H+
  XP_023533366.1  89 KSILCEFFKA-GQCTKGFKCKFSHD 112
                     6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MPPKQQSKAD LAKKQKVVED KTFGLKNKNK SKNVQKYVQN LKQSVQPKVD PKVAAKKKKE  60
EEKAKEKELN DLFKIAVSQP KVPVGVDPKS ILCEFFKAGQ CTKGFKCKFS HDLNVQRKGE  120
KIDIYSDKRD EDTMEDWDQE TLEKVIESKK NDYNLNKPTE IVCKHFLEAV EKKQYGWFWV  180
CPNGGKDCHY RHALPPGYVL KSQMKELLEE ESQKLAIEEE IENERAKVKT TTPITPELFF  240
QWKKKKMDER DAGLAAQQAE RAKNDRMSGR ELFLANASLF VDDAEAYEKY QREEEPEADE  300
PKAKDNATGG PSTSTSAVDD SEDVLLDEDD DDEELDLDEL NELEASLSRT SIQIGEPGIE  360
AS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-166C3H family protein