PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023533341.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | MYB | ||||||||
Protein Properties | Length: 1033aa MW: 115592 Da PI: 4.7879 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_023533341.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.7 | 1.7e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_023533341.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1033 aa Download sequence |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRHR KRKRKGIDYN AEIPFEKRPP PGFFDVSGED RPVEQPKFPA 240 TIEELEGKRR IDVETQLRKQ DIAKNKIAQR QDAPSAVLQA NKLNDPEMVR KRSKLMLPAP 300 QISDHELEEI AKMGYAGDLL AGSEELAEGS GATRALLANY AQTPRQGMTP FRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKKEIQTPNP MLTPSATPGG 420 VGLTPRSGMT PARDAYSFGM TPKGTPIRDE LHINEDMDAH DSAKLESQRQ ADLRRNLSLG 480 LGNLPQPKNE YQVVMQPIPE DKEEPEEMIE EDMSDRIARE RAEEEARQQA LLRKRSKVLQ 540 RELPRPPTAS LELIRNSLIA DGDKSSFVPP TPIEKADEMV RKELLALLEH DNAKYPIDEK 600 VNKEKKKGSK RSGNRPTAAI PTIDDFEVTE MEEADYLINE EARYLCVAMG HEKESLDEFV 660 EAHKTCLNDL MYFPTRNAYG LSSVAGNHEK LAALQDEFEY VKKKMDDDTE KAVRLEKKVK 720 VLTHGYETRS KQSLWPQIEA TFKQIDTAAT ELECFVALQK QEISAASHRI SGISEEVQKQ 780 KELERTLQLR YGDLLADLEK IQKIMDDRKA LAQKEEEIAV ESRALQLAEA EAEAEAEAEA 840 NQSVGEKADN SSEAMSASAE VNCENSMPVT SAPNELTGEQ LNLSVRHEHG TSNAMDIDAE 900 KESAAVSSDI GLTDDKLPSA MEENASLPDN GFEDSDKSRT IDVPSQELLG PHANGSPDSI 960 TVENKISNDS VDGAAIQNVE CSTNNVEEVE DVETQQLNTE AENSEFHLTN LDSSAAPASS 1020 NEDGPRNEGE ATE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 205 | KRRELKAAGIDNRHRKRKRK |
2 | 200 | 205 | RKRKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | MYB family protein |