PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023533110.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 731aa    MW: 82698.2 Da    PI: 5.0669
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023533110.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS313.25.6e-961044743373
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +l++++A a+ +++++++q+l++ l+el sp+gd  q+la+yf++A+ +++++s++++y++l++ +++++  ++   ++  f+evsP+++f+h++
  XP_023533110.1 104 TLIVQIAIAIVDNNASRIQQLMWMLNELGSPYGDIDQKLAFYFLRAMFSHVTNSGERCYRTLAMVSEKRSCFASMRRMVLKFQEVSPWMTFGHVA 198
                     6889**********************************************************9999886665555555556************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledlel 191
                      N  I+ea+ege+++HiiD++ s ++QWp++l+aLasR++++p+lR+T++++ + ++k+ ++e+ +r++kfA+ +gvpf+f++++ + ++++l++
  XP_023533110.1 199 SNGVIMEAFEGEKKLHIIDISNSFCTQWPTFLEALASRSDETPHLRLTTLVA-ARSDKKVMREISRRMEKFARLMGVPFKFKAIYYSgDISQLNF 292
                     ***************************************************9.55799**************************7777******* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerik 284
                      eL v+ +Eala+n++ +  ++     +++++rd +++l+  l+P++++vve+ ad+  ++ +F++ + e+l+++ + fdsl+ ++p++s+e+ +
  XP_023533110.1 293 TELGVNDDEALAINCAGAFRSVT----PVDNRRDFLISLFGALRPRIITVVEEPADLdsDGVDFVKDVQECLRWFRVYFDSLDGSFPSTSDEKLM 383
                     *****************998886....888889********************9888435569******************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvsvSaW 373
                     +Er+  gr+iv+++a + ae +er+et+++W +rl+e GFkpv++se++++++++llr++  dg++v ++    ++ ++l Wk++++v++ aW
  XP_023533110.1 384 LERA-AGRAIVDLLARAPAECVERRETAARWARRLHEGGFKPVSFSEDVNDDVRALLRRYR-DGWTVLDDgedaDAGIFLAWKGQAVVWAAAW 474
                     ****.********************************************************.99999844444478888************** PP
2GRAS163.12.3e-50495714155373
            GRAS 155 keeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                     ++ ++e+ +r++kfA+ +gvpf+f++++ + ++++l++ eL v+ +Eala+n++ +  ++     +++++rd +++l+  l+P++++vve+ ad+
  XP_023533110.1 495 QKVMREISRRMEKFARLMGVPFKFKAIYYSgDISQLNFTELGVNDDEALAINCAGAFRSVT----PVDNRRDFLISLFGALRPRIITVVEEQADL 585
                     6789***********************7777************************998886....888889*********************999 PP

            GRAS 249 ..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                       ++ +F++ + e+l+++ + fdsl+ ++p++s+e+ ++Er+  gr+iv+++a + ae +er+et+++W +rl+e GFkpv++se++++++++ll
  XP_023533110.1 586 dsDGVDFVKDVQECLRWFRVYFDSLDGSFPSTSDEKLMLERA-AGRAIVDLLARAPAECVERRETAARWARRLHEGGFKPVSFSEDVNDDVRALL 679
                     434559************************************.**************************************************** PP

            GRAS 342 rkvksdgyrveee....sgslvlgWkdrpLvsvSaW 373
                     r++  dg++v ++    ++ ++l Wk++++v++ aW
  XP_023533110.1 680 RRYR-DGWTVLDDgedaDAGIFLAWKGQAVVWAAAW 714
                     ****.99999844444478888************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    
MDTLFRLVSN LQPSDQSYNS STSSKNSVDL QNHCFLNPPP PEQCFTSSFM VDQQHFSASS  60
SSNHRLDNDH VHRDHEYIST VNSTDRWFAP LDVNLEFSNG WASTLIVQIA IAIVDNNASR  120
IQQLMWMLNE LGSPYGDIDQ KLAFYFLRAM FSHVTNSGER CYRTLAMVSE KRSCFASMRR  180
MVLKFQEVSP WMTFGHVASN GVIMEAFEGE KKLHIIDISN SFCTQWPTFL EALASRSDET  240
PHLRLTTLVA ARSDKKVMRE ISRRMEKFAR LMGVPFKFKA IYYSGDISQL NFTELGVNDD  300
EALAINCAGA FRSVTPVDNR RDFLISLFGA LRPRIITVVE EPADLDSDGV DFVKDVQECL  360
RWFRVYFDSL DGSFPSTSDE KLMLERAAGR AIVDLLARAP AECVERRETA ARWARRLHEG  420
GFKPVSFSED VNDDVRALLR RYRDGWTVLD DGEDADAGIF LAWKGQAVVW AAAWAPESVD  480
GEKSRQSSSS LMDLQKVMRE ISRRMEKFAR LMGVPFKFKA IYYSGDISQL NFTELGVNDD  540
EALAINCAGA FRSVTPVDNR RDFLISLFGA LRPRIITVVE EQADLDSDGV DFVKDVQECL  600
RWFRVYFDSL DGSFPSTSDE KLMLERAAGR AIVDLLARAP AECVERRETA ARWARRLHEG  660
GFKPVSFSED VNDDVRALLR RYRDGWTVLD DGEDADAGIF LAWKGQAVVW AAAWAPESVD  720
GEKSRQSSSS H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-143GRAS family protein