PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023533048.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 548aa MW: 61008.9 Da PI: 5.9798

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023533048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.4	2e-16	318	364	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq XP_023533048.1 318 VHNLSERRRRDRINEKMKALQELIPRC-----NKADKASMLDEAIEYLKSLQ 364 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MNRWVPDFET DEDFSLHTSS VQLHSKTSSM SDGEVMELLW KNGQAVVHSQ NQKSRTKSPP 60 STTAEQITNR DIRPLNQEEE PQLFMQEDEM ISWLHYPLVD DSTLENSLCN ELLYPSQPQS 120 IEQNAGDSSQ VCTSHGMEFR PLTSMTTTIS RMTARPPIPP TRRTEPETKM NSFGIFSRYT 180 GRLESGPSNS KSEVRESPVV GSTSGDTTWL TPEATASDLQ RTAVADASSG DLACRVMSGG 240 GLTATSSGNN GGLMNMTGAE TEPAIQRTTS FEDRKRKGKE TDDSDYICHS TDVEFESTDA 300 KKQGRGSTST KRYRASEVHN LSERRRRDRI NEKMKALQEL IPRCNKADKA SMLDEAIEYL 360 KSLQFQVQFL WRWSMGCGMV PMMSPGVQQF MPPMPMGLGM GMETSVNLPM MPDRNMLAGS 420 TFPSPAGAAQ IGPTFTHPAF HMTHDPNTDP SRTQGTYLSE HMHSLSEMQN INHPRFSSSL 480 HGYQQFLGSQ QMQVPAEASQ QPSPQNQPAA LPRSLNQHTS RGLESIDNRE PANPTMDPCL 540 NRRKHESS

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MNRWVPDFET DEDFSLHTSS VQLHSKTSSM SDGEVMELLW KNGQAVVHSQ NQKSRTKSPP  60
STTAEQITNR DIRPLNQEEE PQLFMQEDEM ISWLHYPLVD DSTLENSLCN ELLYPSQPQS  120
IEQNAGDSSQ VCTSHGMEFR PLTSMTTTIS RMTARPPIPP TRRTEPETKM NSFGIFSRYT  180
GRLESGPSNS KSEVRESPVV GSTSGDTTWL TPEATASDLQ RTAVADASSG DLACRVMSGG  240
GLTATSSGNN GGLMNMTGAE TEPAIQRTTS FEDRKRKGKE TDDSDYICHS TDVEFESTDA  300
KKQGRGSTST KRYRASEVHN LSERRRRDRI NEKMKALQEL IPRCNKADKA SMLDEAIEYL  360
KSLQFQVQFL WRWSMGCGMV PMMSPGVQQF MPPMPMGLGM GMETSVNLPM MPDRNMLAGS  420
TFPSPAGAAQ IGPTFTHPAF HMTHDPNTDP SRTQGTYLSE HMHSLSEMQN INHPRFSSSL  480
HGYQQFLGSQ QMQVPAEASQ QPSPQNQPAA LPRSLNQHTS RGLESIDNRE PANPTMDPCL  540
NRRKHESS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	323	328	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	1e-64	bHLH family protein