PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023532454.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24531.4 Da    PI: 9.4104
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023532454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.27e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvtfskRrng+lKKA+ELSvLCdaev+v+ifs++g+lye+ss
  XP_023532454.1  9 KRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSS 59
                    79***********************************************96 PP
2K-box55.72.1e-1980171898
           K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        +e  +++++qe++   k++e+L+++q++llG +L+s+sl+e++++e+qL  sl++iR++K++l++eq  +l +k k l een +L +k 
  XP_023532454.1  80 TlRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKC 171
                     33678889********************************************************************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MVRGKVEMKR IENATNRQVT FSKRRNGLLK KAYELSVLCD AEVSVMIFSQ KGRLYEFSST  60
DIHKSIERYR WYGKDGQTNT LRSEVYMQQM KQEADMTAKK MEQLETSQKK LLGRGLDSCS  120
LEEIREIETQ LILSLTRIRE RKSQLFKEQR MKLIEKGKLL IEENIKLAAK CGTQPWEAEG  180
GGEDEGGGIM SLLCTQNAQP SHINTKLFIG LPCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-78MIKC_MADS family protein