PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531880.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HB-PHD

Protein Properties

Length: 904aa MW: 99364.8 Da PI: 5.1897

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531880.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.6	2.1e-13	722	772	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ le+L + F++n+yp ++++e LA++lgL+ +qV+ WF N R + XP_023531880.1 722 RLSQPTLERLLASFQENQYPERATKESLARELGLSLKQVSKWFENTRWSTR 772 678999*****************************************8766 PP
2	PHD	36.8	8.9e-13	341	396	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C Cg+ e++++lCdg C++ fH+ Cl+++l ++++p + wlC+ C++k XP_023531880.1 341 FCGKCGSkeLSLENDIILCDGvCDRGFHQFCLEPPLLNSDIPPDdeGWLCPGCDCK 396 699999965556******77**************999999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 904 aa Download sequence
MEERDEYTES RTINKSAAVQ EAKASVEVEV LTSLANEQMH SAPNYLELGT IRDWTSKTGS 60 PDEEKPGVKQ NMEEDRRELG LGEAHSGLPE KSSQTISKLA DNDQGEAGNL LSSDKDTENL 120 ILPIEVETTA LLNECLEPPT EDDNKNYIEQ ANPPIEDSIQ NTYIKNLNMV PDNSPELGCK 180 DKRVLKSKKK NYILRSLVSS DRVLRSRTQD KAKAPEPSND LSNVTAGEEG KGKKKKKNRK 240 IKGKGARVDE FSSIRNHLRY LVNRIKYEQS LIEAYSSEGW KGFSSDKLKP EKELQRASNE 300 IMRRKLKIRD LFQRIDALCS EGRFSEALFD SEGQIDSEDI FCGKCGSKEL SLENDIILCD 360 GVCDRGFHQF CLEPPLLNSD IPPDDEGWLC PGCDCKDDCI DLLNEFQGSN LSITDGWEKV 420 FPEAAAAAAG RSSDHTMSLP SDDSDDGDYD PDVPDAIDQD GESSSDHSSS DQSSSDLSSS 480 DKSGYASASA SEELEAPPND DQYLGLPSDD SEDDDYDPGA PVRDEGVGQE SSSSDFTSDS 540 EDLAALVNNG SSKDDNIASS PLNNTVPVRN SNGQSSGRGP NKSAQHNKLS SLVGSGPDEG 600 GLELVSGRRH VERLDYKKLH DETFGNVPTD SSDDTYGSDS IDSSDDRGRG RSTRKGSPKN 660 PVPALSRNGT DDLKNIKTKC SSKRTRQKPA AENMDNSVTK TPEGTLKSSS SVRRTTSSSH 720 RRLSQPTLER LLASFQENQY PERATKESLA RELGLSLKQV SKWFENTRWS TRHPSSEANK 780 ARSASRMGTQ SSQTSRKPPK PEQESGACFR DTCSNGAQHQ ESPKAISVVA PCQSGVTGDD 840 KSANQRTKRP ESTATKSRKR KGRSDQVASR SKDRKKSRKP PAKSSKVDEI QTADKVKKRR 900 RKSM

Sequence ? help Back to Top

Protein Sequence Length: 904 aa Download sequence

MEERDEYTES RTINKSAAVQ EAKASVEVEV LTSLANEQMH SAPNYLELGT IRDWTSKTGS  60
PDEEKPGVKQ NMEEDRRELG LGEAHSGLPE KSSQTISKLA DNDQGEAGNL LSSDKDTENL  120
ILPIEVETTA LLNECLEPPT EDDNKNYIEQ ANPPIEDSIQ NTYIKNLNMV PDNSPELGCK  180
DKRVLKSKKK NYILRSLVSS DRVLRSRTQD KAKAPEPSND LSNVTAGEEG KGKKKKKNRK  240
IKGKGARVDE FSSIRNHLRY LVNRIKYEQS LIEAYSSEGW KGFSSDKLKP EKELQRASNE  300
IMRRKLKIRD LFQRIDALCS EGRFSEALFD SEGQIDSEDI FCGKCGSKEL SLENDIILCD  360
GVCDRGFHQF CLEPPLLNSD IPPDDEGWLC PGCDCKDDCI DLLNEFQGSN LSITDGWEKV  420
FPEAAAAAAG RSSDHTMSLP SDDSDDGDYD PDVPDAIDQD GESSSDHSSS DQSSSDLSSS  480
DKSGYASASA SEELEAPPND DQYLGLPSDD SEDDDYDPGA PVRDEGVGQE SSSSDFTSDS  540
EDLAALVNNG SSKDDNIASS PLNNTVPVRN SNGQSSGRGP NKSAQHNKLS SLVGSGPDEG  600
GLELVSGRRH VERLDYKKLH DETFGNVPTD SSDDTYGSDS IDSSDDRGRG RSTRKGSPKN  660
PVPALSRNGT DDLKNIKTKC SSKRTRQKPA AENMDNSVTK TPEGTLKSSS SVRRTTSSSH  720
RRLSQPTLER LLASFQENQY PERATKESLA RELGLSLKQV SKWFENTRWS TRHPSSEANK  780
ARSASRMGTQ SSQTSRKPPK PEQESGACFR DTCSNGAQHQ ESPKAISVVA PCQSGVTGDD  840
KSANQRTKRP ESTATKSRKR KGRSDQVASR SKDRKKSRKP PAKSSKVDEI QTADKVKKRR  900
RKSM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	238	GKKKKKN
2	859	879	KRKGRSDQVASRSKDRKKSRK
3	873	880	DRKKSRKP
4	897	902	KKRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	6e-88	HB-PHD family protein