PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531701.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HB-PHD

Protein Properties

Length: 718aa MW: 81236.3 Da PI: 9.4523

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531701.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.4	8e-11	508	550	12	54
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 +e L ++F++n ps+e +e L+ +lgL+ ++V+ WF+N R+ XP_023531701.1 508 VEKLRQVFAENELPSREVKENLSIELGLDAEKVSKWFKNARYS 550 789**************************************85 PP
2	PHD	35.8	1.9e-12	239	294	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+ +fH+kCl+++l++e++p g w+C+ C++k XP_023531701.1 239 FCAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLDTENIPPGdqGWFCKFCECK 294 699999854455******56****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence
MKGTGRRLTQ KESGKCSHSK METGSELILP LKLKRCSKIS HSKQKKSRTK SHAQEIGSTL 60 KKRPFPKSLS KGNKNVTIRQ MAGKKFLLKK LNSKYTKDLL LSKLQGGKSL PSSSTEGNAE 120 KVEPVTKINQ QRKRSKNKGK REKLELDEAS RLQRRTRYLI IKMKLEQNLI DAYSGEGWKG 180 QSREKIRPEK ELQRAMKQIL QCKLGIRDAI RQLDLLGSVG CIEDSVIGPD GSVYHEHIFC 240 AKCKLREAFP DNDIILCDGT CNCAFHQKCL DPPLDTENIP PGDQGWFCKF CECKMEILEG 300 MNAHLGTRFS MNVSWEDIFK EEAAFPDGRN ASLNHEEDWP SDDSADDDYD PDKKEIGYDN 360 LSGEENDKDV FEESSSSTSL SWSLDGEDLT DRDGIGCEDH FGASSSIVSD GSNEEGITGG 420 RRQRQAVDYK KLYVEMFGKD STAHEQVSED EDWGPAKRRR REKECDAAST LMSLCESEKK 480 SPKIDVEAEK RPLNSQSRSF FRIPLYAVEK LRQVFAENEL PSREVKENLS IELGLDAEKV 540 SKWFKNARYS ALRTRKAEGA TQSHSPNKTL NEPRLADSKE MSACPPSSED APIKELQLKS 600 RNSRYKKKQH RKSSLVSSNN NKDALDLGDD ISLKNLLKNR KTKVKKRVKF VARGGGGGRG 660 QEAEVEMERL CKIKGRLQIM KQKLLRLSNK KEDGILDRSH MFEQSIVYVP VAVLKEKV

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence

MKGTGRRLTQ KESGKCSHSK METGSELILP LKLKRCSKIS HSKQKKSRTK SHAQEIGSTL  60
KKRPFPKSLS KGNKNVTIRQ MAGKKFLLKK LNSKYTKDLL LSKLQGGKSL PSSSTEGNAE  120
KVEPVTKINQ QRKRSKNKGK REKLELDEAS RLQRRTRYLI IKMKLEQNLI DAYSGEGWKG  180
QSREKIRPEK ELQRAMKQIL QCKLGIRDAI RQLDLLGSVG CIEDSVIGPD GSVYHEHIFC  240
AKCKLREAFP DNDIILCDGT CNCAFHQKCL DPPLDTENIP PGDQGWFCKF CECKMEILEG  300
MNAHLGTRFS MNVSWEDIFK EEAAFPDGRN ASLNHEEDWP SDDSADDDYD PDKKEIGYDN  360
LSGEENDKDV FEESSSSTSL SWSLDGEDLT DRDGIGCEDH FGASSSIVSD GSNEEGITGG  420
RRQRQAVDYK KLYVEMFGKD STAHEQVSED EDWGPAKRRR REKECDAAST LMSLCESEKK  480
SPKIDVEAEK RPLNSQSRSF FRIPLYAVEK LRQVFAENEL PSREVKENLS IELGLDAEKV  540
SKWFKNARYS ALRTRKAEGA TQSHSPNKTL NEPRLADSKE MSACPPSSED APIKELQLKS  600
RNSRYKKKQH RKSSLVSSNN NKDALDLGDD ISLKNLLKNR KTKVKKRVKF VARGGGGGRG  660
QEAEVEMERL CKIKGRLQIM KQKLLRLSNK KEDGILDRSH MFEQSIVYVP VAVLKEKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	51	KKSRTKS
2	457	483	KRRRREKECDAASTLMSLCESEKKSPK
3	458	463	RRRREK
4	639	646	NRKTKVKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-159	HB-PHD family protein