PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531521.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 497aa MW: 57357.5 Da PI: 7.3442

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531521.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.4	5.7e-11	94	147	1	57
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenl 57 +W+++e laL+++r+++++ + ++ We+vs++ e gf+r+p +Ckek+e+ XP_023531521.1 94 QWSNDELLALLRIRSNIDNCFPES-----TWEHVSRYRklGEVGFTRTPDKCKEKFEDE 147 7****************99998.....9*986669**************96 PP
2	trihelix	90.4	1.9e-28	374	474	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rW+++evlaL+++r ++ +++++++ k+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tc XP_023531521.1 374 RWPRDEVLALVNVRCSLYDNSNNNNsnsdqdksggtdqatlPKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SIDSRTC 467 8************777777765445667778888889999****************************************8.78889 PP trihelix 80 pyfdqle 86 pyf+ql XP_023531521.1 468 PYFHQLS 474 *****95 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MFEGSVSEQL HQFLAPRTTT TTTTTTATPP NSNSLPFLLH SPNFNFHSFD SYDPSSNHPL 60 VHQSSENDNE TTTMANLSVA MDLEDHHRHN HHNQWSNDEL LALLRIRSNI DNCFPESTWE 120 HVSRYRKLGE VGFTRTPDKC KEKFEDEKTE DRGAVVVVPE EAKHEKGNDN NDNNDDNDDN 180 DEQQQSSSKS KRKRKTRTTR QREFEVLKGY CEDIVKNMMI QQEEIHSKLL HEMLKREEEK 240 IAKEECWKKQ QMERFHKELQ MMAQEQAIAS DRQATMIEIL NQISISNPFS SSKSKKDLQN 300 LLHSLNHHHN NNNNLPNSPS SSSLIQTQNP KNPSSSTRIL PPQDPNSNPP PFSIQKLPQN 360 PKSREKEVDD LGKRWPRDEV LALVNVRCSL YDNSNNNNSN SDQDKSGGTD QATLPKAPLW 420 ERISQGMLQL GYKRSAKRCK EKWENINKYF RKTKDVNKKR SIDSRTCPYF HQLSTLYNQG 480 GNRSMENLPD NVVGKPL

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MFEGSVSEQL HQFLAPRTTT TTTTTTATPP NSNSLPFLLH SPNFNFHSFD SYDPSSNHPL  60
VHQSSENDNE TTTMANLSVA MDLEDHHRHN HHNQWSNDEL LALLRIRSNI DNCFPESTWE  120
HVSRYRKLGE VGFTRTPDKC KEKFEDEKTE DRGAVVVVPE EAKHEKGNDN NDNNDDNDDN  180
DEQQQSSSKS KRKRKTRTTR QREFEVLKGY CEDIVKNMMI QQEEIHSKLL HEMLKREEEK  240
IAKEECWKKQ QMERFHKELQ MMAQEQAIAS DRQATMIEIL NQISISNPFS SSKSKKDLQN  300
LLHSLNHHHN NNNNLPNSPS SSSLIQTQNP KNPSSSTRIL PPQDPNSNPP PFSIQKLPQN  360
PKSREKEVDD LGKRWPRDEV LALVNVRCSL YDNSNNNNSN SDQDKSGGTD QATLPKAPLW  420
ERISQGMLQL GYKRSAKRCK EKWENINKYF RKTKDVNKKR SIDSRTCPYF HQLSTLYNQG  480
GNRSMENLPD NVVGKPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	1e-72	Trihelix family protein