PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531520.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 519aa MW: 60095.5 Da PI: 7.1349

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531520.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.5	9.9e-15	94	153	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +W+++e laL+++r+++++ + ++ We+vs+k+ e gf+r+p +Ckek+e+ ++++ i+ XP_023531520.1 94 QWSNDELLALLRIRSNIDNCFPES-----TWEHVSRKLGEVGFTRTPDKCKEKFEDESRYFNHIN 153 7****************99998.....9*****************************9876 PP
2	trihelix	90.3	2e-28	396	496	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rW+++evlaL+++r ++ +++++++ k+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tc XP_023531520.1 396 RWPRDEVLALVNVRCSLYDNSNNNNsnsdqdksggtdqatlPKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SIDSRTC 489 8************777777765445667778888889999****************************************8.78889 PP trihelix 80 pyfdqle 86 pyf+ql XP_023531520.1 490 PYFHQLS 496 *****95 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MFEGSVSEQL HQFLAPRTTT TTTTTTATPP NSNSLPFLLH SPNFNFHSFD SYDPSSNHPL 60 VHQSSENDNE TTTMANLSVA MDLEDHHRHN HHNQWSNDEL LALLRIRSNI DNCFPESTWE 120 HVSRKLGEVG FTRTPDKCKE KFEDESRYFN HINYNKTCMF LTHELNYHQE TEDRGAVVVV 180 PEEAKHEKGN DNNDNNDDND DNDEQQQSSS KSKRKRKTRT TRQREFEVLK GYCEDIVKNM 240 MIQQEEIHSK LLHEMLKREE EKIAKEECWK KQQMERFHKE LQMMAQEQAI ASDRQATMIE 300 ILNQISISNP FSSSKSKKDL QNLLHSLNHH HNNNNNLPNS PSSSSLIQTQ NPKNPSSSTR 360 ILPPQDPNSN PPPFSIQKLP QNPKSREKEV DDLGKRWPRD EVLALVNVRC SLYDNSNNNN 420 SNSDQDKSGG TDQATLPKAP LWERISQGML QLGYKRSAKR CKEKWENINK YFRKTKDVNK 480 KRSIDSRTCP YFHQLSTLYN QGGNRSMENL PDNVVGKPL

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MFEGSVSEQL HQFLAPRTTT TTTTTTATPP NSNSLPFLLH SPNFNFHSFD SYDPSSNHPL  60
VHQSSENDNE TTTMANLSVA MDLEDHHRHN HHNQWSNDEL LALLRIRSNI DNCFPESTWE  120
HVSRKLGEVG FTRTPDKCKE KFEDESRYFN HINYNKTCMF LTHELNYHQE TEDRGAVVVV  180
PEEAKHEKGN DNNDNNDDND DNDEQQQSSS KSKRKRKTRT TRQREFEVLK GYCEDIVKNM  240
MIQQEEIHSK LLHEMLKREE EKIAKEECWK KQQMERFHKE LQMMAQEQAI ASDRQATMIE  300
ILNQISISNP FSSSKSKKDL QNLLHSLNHH HNNNNNLPNS PSSSSLIQTQ NPKNPSSSTR  360
ILPPQDPNSN PPPFSIQKLP QNPKSREKEV DDLGKRWPRD EVLALVNVRC SLYDNSNNNN  420
SNSDQDKSGG TDQATLPKAP LWERISQGML QLGYKRSAKR CKEKWENINK YFRKTKDVNK  480
KRSIDSRTCP YFHQLSTLYN QGGNRSMENL PDNVVGKPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	1e-72	Trihelix family protein