PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531414.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 755aa MW: 83554.7 Da PI: 8.5771

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531414.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.6	1.8e-19	662	744	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+ +e + Li++r +++ r++ k +++lWee+s+ m g++rsp qCk+ w +l ++y++ ++ek ++++pyf++++a XP_023531414.1 662 KWKPEEMKRLIKLRGQLHARFQVPKGRMALWEEISRSMLGDGMNRSPGQCKSLWASLVQKYEQDSKSEKTI----KKSWPYFEEMDA 744 7***********************************************************999999985....456*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence
MGNSSFGFPY TNLRFILYSG VISSTWCLLV ICGMTVLPWQ LIKKRLKENG IFVPSRLKVF 60 KMRKRFTAGP FEIEPIRVTH SIPDCCGLVL RCADGTILHT GDWKIDESPL DGKVFDRETL 120 EELSKEGVTL MMSDSTNVLS PGRTISESVV ADALLRRISA AKGRVITTQF ASNIHRLGSV 180 KAAADLTGRK LVFVGMSLRT YLEAAWKDGK APIDPSTLVK VEDIEAYAPK DLLIVTTGSQ 240 AEPRAALNLA SYGSSHSLKL SKEDMILYSA KVIPGNESRV MKMLNRISEI GSNIIMGKNE 300 LLHTSGHAYR GELEEILQIV KPQHFLPIHG ELLFLKEHEL LGRSTGIRHT TVIKNGEMLG 360 VSHLRNRRVL SNGFTSLGKE NLQLKYSDGD KAFGSSSELF VDERLKIATD GIIVVSMEIL 420 RPQSIDGLNE TGIKGKLRIT TRCLWLDKGK LLDALHKAAH AALSSCPVNC PLAHMERTVS 480 ELLKKMVRKY SGKRPEVIVL AVENPGGVLS EQLGRRLSGK SDTRFGMSAL RKAVDGQPTK 540 SHLNGIRPDG NDDLHSEDNS SQESQGYYIE PGSLLPEEDY NSSNSNLTET ESSGNEGLED 600 FWRPFITPSS PVNELVKEDE GSVQPSKNTL EISNGGEEGS DEGSLKTSNS SEKPLKPVKS 660 NKWKPEEMKR LIKLRGQLHA RFQVPKGRMA LWEEISRSML GDGMNRSPGQ CKSLWASLVQ 720 KYEQDSKSEK TIKKSWPYFE EMDAILSDSE AVASK

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence

MGNSSFGFPY TNLRFILYSG VISSTWCLLV ICGMTVLPWQ LIKKRLKENG IFVPSRLKVF  60
KMRKRFTAGP FEIEPIRVTH SIPDCCGLVL RCADGTILHT GDWKIDESPL DGKVFDRETL  120
EELSKEGVTL MMSDSTNVLS PGRTISESVV ADALLRRISA AKGRVITTQF ASNIHRLGSV  180
KAAADLTGRK LVFVGMSLRT YLEAAWKDGK APIDPSTLVK VEDIEAYAPK DLLIVTTGSQ  240
AEPRAALNLA SYGSSHSLKL SKEDMILYSA KVIPGNESRV MKMLNRISEI GSNIIMGKNE  300
LLHTSGHAYR GELEEILQIV KPQHFLPIHG ELLFLKEHEL LGRSTGIRHT TVIKNGEMLG  360
VSHLRNRRVL SNGFTSLGKE NLQLKYSDGD KAFGSSSELF VDERLKIATD GIIVVSMEIL  420
RPQSIDGLNE TGIKGKLRIT TRCLWLDKGK LLDALHKAAH AALSSCPVNC PLAHMERTVS  480
ELLKKMVRKY SGKRPEVIVL AVENPGGVLS EQLGRRLSGK SDTRFGMSAL RKAVDGQPTK  540
SHLNGIRPDG NDDLHSEDNS SQESQGYYIE PGSLLPEEDY NSSNSNLTET ESSGNEGLED  600
FWRPFITPSS PVNELVKEDE GSVQPSKNTL EISNGGEEGS DEGSLKTSNS SEKPLKPVKS  660
NKWKPEEMKR LIKLRGQLHA RFQVPKGRMA LWEEISRSML GDGMNRSPGQ CKSLWASLVQ  720
KYEQDSKSEK TIKKSWPYFE EMDAILSDSE AVASK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein