PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531413.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 778aa MW: 86103.8 Da PI: 8.6511

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.6	1.9e-19	685	767	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+ +e + Li++r +++ r++ k +++lWee+s+ m g++rsp qCk+ w +l ++y++ ++ek ++++pyf++++a XP_023531413.1 685 KWKPEEMKRLIKLRGQLHARFQVPKGRMALWEEISRSMLGDGMNRSPGQCKSLWASLVQKYEQDSKSEKTI----KKSWPYFEEMDA 767 7***********************************************************999999985....456*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 778 aa Download sequence
MLVSCFLTTM SLVFRKLYPI PHSSEDGVTK LKLLSLHMVM KITLVIPALD SHTPIYASSF 60 TVELIKKRLK ENGIFVPSRL KVFKMRKRFT AGPFEIEPIR VTHSIPDCCG LVLRCADGTI 120 LHTGDWKIDE SPLDGKVFDR ETLEELSKEG VTLMMSDSTN VLSPGRTISE SVVADALLRR 180 ISAAKGRVIT TQFASNIHRL GSVKAAADLT GRKLVFVGMS LRTYLEAAWK DGKAPIDPST 240 LVKVEDIEAY APKDLLIVTT GSQAEPRAAL NLASYGSSHS LKLSKEDMIL YSAKVIPGNE 300 SRVMKMLNRI SEIGSNIIMG KNELLHTSGH AYRGELEEIL QIVKPQHFLP IHGELLFLKE 360 HELLGRSTGI RHTTVIKNGE MLGVSHLRNR RVLSNGFTSL GKENLQLKYS DGDKAFGSSS 420 ELFVDERLKI ATDGIIVVSM EILRPQSIDG LNETGIKGKL RITTRCLWLD KGKLLDALHK 480 AAHAALSSCP VNCPLAHMER TVSELLKKMV RKYSGKRPEV IVLAVENPGG VLSEQLGRRL 540 SGKSDTRFGM SALRKAVDGQ PTKSHLNGIR PDGNDDLHSE DNSSQESQGY YIEPGSLLPE 600 EDYNSSNSNL TETESSGNEG LEDFWRPFIT PSSPVNELVK EDEGSVQPSK NTLEISNGGE 660 EGSDEGSLKT SNSSEKPLKP VKSNKWKPEE MKRLIKLRGQ LHARFQVPKG RMALWEEISR 720 SMLGDGMNRS PGQCKSLWAS LVQKYEQDSK SEKTIKKSWP YFEEMDAILS DSEAVASK

Sequence ? help Back to Top

Protein Sequence Length: 778 aa Download sequence

MLVSCFLTTM SLVFRKLYPI PHSSEDGVTK LKLLSLHMVM KITLVIPALD SHTPIYASSF  60
TVELIKKRLK ENGIFVPSRL KVFKMRKRFT AGPFEIEPIR VTHSIPDCCG LVLRCADGTI  120
LHTGDWKIDE SPLDGKVFDR ETLEELSKEG VTLMMSDSTN VLSPGRTISE SVVADALLRR  180
ISAAKGRVIT TQFASNIHRL GSVKAAADLT GRKLVFVGMS LRTYLEAAWK DGKAPIDPST  240
LVKVEDIEAY APKDLLIVTT GSQAEPRAAL NLASYGSSHS LKLSKEDMIL YSAKVIPGNE  300
SRVMKMLNRI SEIGSNIIMG KNELLHTSGH AYRGELEEIL QIVKPQHFLP IHGELLFLKE  360
HELLGRSTGI RHTTVIKNGE MLGVSHLRNR RVLSNGFTSL GKENLQLKYS DGDKAFGSSS  420
ELFVDERLKI ATDGIIVVSM EILRPQSIDG LNETGIKGKL RITTRCLWLD KGKLLDALHK  480
AAHAALSSCP VNCPLAHMER TVSELLKKMV RKYSGKRPEV IVLAVENPGG VLSEQLGRRL  540
SGKSDTRFGM SALRKAVDGQ PTKSHLNGIR PDGNDDLHSE DNSSQESQGY YIEPGSLLPE  600
EDYNSSNSNL TETESSGNEG LEDFWRPFIT PSSPVNELVK EDEGSVQPSK NTLEISNGGE  660
EGSDEGSLKT SNSSEKPLKP VKSNKWKPEE MKRLIKLRGQ LHARFQVPKG RMALWEEISR  720
SMLGDGMNRS PGQCKSLWAS LVQKYEQDSK SEKTIKKSWP YFEEMDAILS DSEAVASK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein