PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531387.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family BBR-BPC
Protein Properties Length: 313aa    MW: 35087.7 Da    PI: 10.1746
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind358.81.1e-10913131301
       GAGA_bind   1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 
                     mdd  ++e  r+k  y++              ++ ++l   +++++ms+iaerda+irernlalsek++a+a+r++a+ qrd+a+a+r+ al+er
  XP_023531387.1   1 MDDGRQHEngRHKLdYFRgspspwnmmpphhvKEpNALV--MNKKIMSIIAERDAAIRERNLALSEKNDALAARNEALRQRDEAFAQRDTALMER 93 
                     666655555788877888999999998876663335666..99**************************************************** PP

       GAGA_bind  78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk.kkks 171
                     dn+l+al+ ++ns  s+ p ++++ +++k  + l + + p+++++++++++ ++++a+pi+  a+ea ++++ k+++ +k+  +k +k + kk +
  XP_023531387.1  94 DNALAALQIRDNS--SNFPLSSGIQRKAKRSHYLSN-HMPNMTETPYGTKDVQITDAFPITVIASEAVKSQQGKQTKDNKTVSSKASKLPrKKVG 185
                     *********9998..667788888899999887777.77*************************9999999999888877777777774414445 PP

       GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266
                     e+ +++ ++++  ++ +++++ +d++ln vs+D+s++P+P+CsCtG  rqCYkWGnGGWqS+CCtt +S+yPLP ++++r+aR++grKmS+++f+
  XP_023531387.1 186 EDLNRQAATDG--TKYRTDWDGQDVGLNLVSFDDSSMPAPICSCTGLARQCYKWGNGGWQSSCCTTHMSMYPLPHMPNKRHARMGGRKMSGSVFT 278
                     66666666666..68******************************************************************************** PP

       GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     klL++Laa G+dls pvDLkdhWA+HGtn+++tir
  XP_023531387.1 279 KLLSRLAAAGHDLSVPVDLKDHWARHGTNRYITIR 313
                     **********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MDDGRQHENG RHKLDYFRGS PSPWNMMPPH HVKEPNALVM NKKIMSIIAE RDAAIRERNL  60
ALSEKNDALA ARNEALRQRD EAFAQRDTAL MERDNALAAL QIRDNSSNFP LSSGIQRKAK  120
RSHYLSNHMP NMTETPYGTK DVQITDAFPI TVIASEAVKS QQGKQTKDNK TVSSKASKLP  180
RKKVGEDLNR QAATDGTKYR TDWDGQDVGL NLVSFDDSSM PAPICSCTGL ARQCYKWGNG  240
GWQSSCCTTH MSMYPLPHMP NKRHARMGGR KMSGSVFTKL LSRLAAAGHD LSVPVDLKDH  300
WARHGTNRYI TIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-133BBR-BPC family protein