PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531288.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NF-YC

Protein Properties

Length: 225aa MW: 24868.1 Da PI: 5.2678

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178	8.8e-56	39	143	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw+ q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl XP_023531288.1 39 QLQMFWSFQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 133 89**9887789****************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprde+k XP_023531288.1 134 VDIVPRDEIK 143 *****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MENNNQAQSS PYPPPPPPPP QAPVPAPHFH HLLQQQQQQL QMFWSFQRQE IEQVNDFKNH 60 QLPLARIKKI MKADEDVRMI SAEAPILFAK ACELFILELT IRSWLHAEEN KRRTLQKNDI 120 AAAITRTDIF DFLVDIVPRD EIKDEAGLGG MVGATASGVP YYYPPMGQPA GAPGGMMIGR 180 PAMDPIGVYA QPPSQAWQSA WQPSAEDGSY ASGGNSGQGN LDGQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	5e-86	NF-YC family protein