PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531137.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 550aa    MW: 62201.7 Da    PI: 8.0817
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.7e-0694114526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C f++  G+C+ Gd+C+F Hg
  XP_023531137.1  94 PCYFYFN-GFCSKGDTCTFLHG 114
                     7999999.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    
MGEEFRKRNT DCVYFLASPL TCKKVCFCCL NNGFDCEYRH SEIARLNPRD CYYWLAGNCL  60
NAACSFRHPP MDGAAGKVFE SSQSSVPVNK TNIPCYFYFN GFCSKGDTCT FLHGNDIPVA  120
ARSTKIGNTS SSEDKTASSH KNGLASTDAD AFLHPSKKVV GPTIEGTFRE SLSHPSAENV  180
SIRSACAKIS LPECEKVAVD EPVSLPLTEG SKYSRSHVHV VADQSYEEPM MDSSEDENPL  240
ESSTGFDVVV GHESENLDSD DDSEYLLSTN LEQRELDTEL CRDDDEDYIA YEPMHSDLEL  300
LYEREMHSYD HLERNSVLSN DRNVISCSRG KLIKSLFTRK RKLTLMNIDS EEWNRTDLRS  360
YLQRDGVSGN GSIIGLSRRR NGMSRRTSRN FAKPWKDGLY HPTLGRRLPL HVGKVSGESL  420
SENLTFSNSI SGYRSFRHSR QYKPCRYYDG YRLARRQHPL SNISRRPVSR EPVPRDHGFN  480
LKSVPFKGPK TLSQIKDEKR KVEENRGLSM KKRHSIGCAS SSADFRGPKP LSDILKDKRK  540
VEKLVKEIIS