PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023530197.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 760aa    MW: 83109.4 Da    PI: 6.2895
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023530197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.8e-2095150156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++++e++F+++++p+ ++r+eL++ lgL+  qVk+WFqN+R+++k
  XP_023530197.1  95 KKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRDLGLEPLQVKFWFQNKRTQMK 150
                     688999***********************************************999 PP
2START208.92e-652784981206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+ +ep+W++      + +n de++++f+++ +     +s+ea+ra++vv m++  lve l+d++ qW+  ++    +a+tl
  XP_023530197.1 278 ELAVAAMEELIRMAQMGEPLWMTALdgstTLLNPDEYVRTFPRGIGpkpagFSTEASRATAVVVMNHISLVEMLMDVN-QWSAVFTgivsRATTL 371
                     57899********************9999999***********999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     e +s+g      galq+m +elq++splvp R+++fvRy++q+g+g+w++vdvS+d+ ++ p      R++++pSg+li ++++g+skvtwvehv
  XP_023530197.1 372 EILSTGvagnydGALQVMASELQVPSPLVPtRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPA----LRCRRRPSGCLILEMPQGYSKVTWVEHV 462
                     ************************************************************995....**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+l++++v+sg+a+gak+w atl+rqce+
  XP_023530197.1 463 EVDDRGIHSLYNQFVRSGHAFGAKRWIATLDRQCER 498
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    
MPAGMMIPAR NAPSMIGRNG NVGVFGSPAS LVLGQANMME GAQLHALDMP QSGLPDSDYG  60
MMKEAEDFDS ATKSSSENHE VGSGDDQDHR QRSKKKRYHR HTQHQIQQME AFFKECPHPD  120
DKQRKELSRD LGLEPLQVKF WFQNKRTQMK THHERHENTH LRTQNEKLRA DNMRYREALS  180
NATCPNCGGP TAIGEMSFDE HHLRLENARL REEIDRISAI AAKYVGKPVS SFPLLSPSIP  240
THPLELGMGS YGADMYGAAD LLRTITTPSE ADKPMIIELA VAAMEELIRM AQMGEPLWMT  300
ALDGSTTLLN PDEYVRTFPR GIGPKPAGFS TEASRATAVV VMNHISLVEM LMDVNQWSAV  360
FTGIVSRATT LEILSTGVAG NYDGALQVMA SELQVPSPLV PTRESYFVRY CKQHGEGTWA  420
VVDVSLDNLR PAPALRCRRR PSGCLILEMP QGYSKVTWVE HVEVDDRGIH SLYNQFVRSG  480
HAFGAKRWIA TLDRQCERLA SAMLTSIPNG DAGVIMNQEG RKSMLKLAER MVMSFCGGVS  540
ASTAHTWTTL SGTGADDVRV MTRKSIDDPG RPPGIVLSAA TSFWLPVPPK RVFDFLRDEN  600
SRNEWDILSN GGVVQEMAHI ANGRDTGNSV SLLRVNSPNS SQSNMLILQE NITDQTAAFV  660
IYAPVDIVAI NVVLNGGDPD YVALLPSGFA ILPDGTAASN DGANSIMEHG SGGSLLTVAF  720
QILVDSIPTA KLSLGSVATV NNLIACTVER IRASLSCENP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein