PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023529646.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 638aa MW: 72131.5 Da PI: 4.8342

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023529646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.1e-12	383	426	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr l+Pk + K++Ka+iL A++++k+Lq XP_023529646.1 383 VAERKRRKKLNERLYNLRALVPKiS------KMDKASILGDAIDFVKELQ 426 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence
MKSLSLFTLS SIILHFPVHN SFFSDINHSI VIMQTLMERL RPLVGSKSWD YCVLWKLSQD 60 QRCIEWVDCC CAGTENNQNG GEEHVFPCRD TLSPHPRASS CDLLAQLPCS VPLNSGVYIQ 120 TLLSNEPRWL LFSNGTDSTA LEETMGTRVL IPFPFGLVEL FVAKHASEDQ HVIDFVTTQC 180 SISIEQGAII NSSNMDTSFS VDVNATNEIQ SKPFVADQNV VIEDPENQFE APGSTAPTLE 240 NANVGYEISL DRIRLCSSPM NFLQQFNYSS ENRNKNEIFH ECSQDAFHTD KQGNPYKFSA 300 ENEFQEVDIM QGSLMNNTSN IHMQFKENTE CKEQQGEEKD LVKNENGRSD SVSDCSDQID 360 DEDDAVAKYR RRTGQGPQSK NLVAERKRRK KLNERLYNLR ALVPKISKMD KASILGDAID 420 FVKELQKQVK ELQDELEEHS DDENGKIVVT GNDGNKTSVQ LPEFLSQNDK AQNSYHIGVL 480 GSGSLLKQNH QDTEGTNNDK TQQMEPQVEV AQIDGNEFFV KVFCENKRGG FMRLMEALNA 540 LGLEVTNANV TSYRGLVSNV FKVGKKDSEL VQADDVRDSL LEITKYPCRG WSEMVKQPEC 600 SVSRMDYQTH PHTHQHQHQI QHPFLDKAIN SRLHLLDD

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence

MKSLSLFTLS SIILHFPVHN SFFSDINHSI VIMQTLMERL RPLVGSKSWD YCVLWKLSQD  60
QRCIEWVDCC CAGTENNQNG GEEHVFPCRD TLSPHPRASS CDLLAQLPCS VPLNSGVYIQ  120
TLLSNEPRWL LFSNGTDSTA LEETMGTRVL IPFPFGLVEL FVAKHASEDQ HVIDFVTTQC  180
SISIEQGAII NSSNMDTSFS VDVNATNEIQ SKPFVADQNV VIEDPENQFE APGSTAPTLE  240
NANVGYEISL DRIRLCSSPM NFLQQFNYSS ENRNKNEIFH ECSQDAFHTD KQGNPYKFSA  300
ENEFQEVDIM QGSLMNNTSN IHMQFKENTE CKEQQGEEKD LVKNENGRSD SVSDCSDQID  360
DEDDAVAKYR RRTGQGPQSK NLVAERKRRK KLNERLYNLR ALVPKISKMD KASILGDAID  420
FVKELQKQVK ELQDELEEHS DDENGKIVVT GNDGNKTSVQ LPEFLSQNDK AQNSYHIGVL  480
GSGSLLKQNH QDTEGTNNDK TQQMEPQVEV AQIDGNEFFV KVFCENKRGG FMRLMEALNA  540
LGLEVTNANV TSYRGLVSNV FKVGKKDSEL VQADDVRDSL LEITKYPCRG WSEMVKQPEC  600
SVSRMDYQTH PHTHQHQHQI QHPFLDKAIN SRLHLLDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	370	391	RRRTGQGPQSKNLVAERKRRKK
2	385	392	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-129	bHLH family protein