PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023528890.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB_related
Protein Properties Length: 288aa    MW: 32005.2 Da    PI: 8.2425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023528890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73e-143579147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
   XP_023528890.1 35 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 79
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MNSNASNPHT SMATSSAADS SGKKVRKPYT ITKSRESWTE EEHDKFLEAL QLFDRDWKKI  60
EDFVGSKTVI QIRSHAQKYF LKVQKNGTIA HVPPPRPKRK ASHPYPQKAS KNVLVPMQAS  120
MAYPSSVNTL ALGYCPWEDA SIMINPSSNK VTHPQDEFTN LHRSETENAS EGTPMINSNS  180
LNVIGSPDTG KQGKQAPMLH GLPDFAEVYG FIGSVFDPES KEHVNKLKEM DPINFETVLL  240
LMRNLTFNLS SPDFEPLRTV LSTYDVNTKT VAVAAGVPTK KHTDDISC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-120MYB_related family protein