PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528884.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 521aa MW: 57706.4 Da PI: 6.4507

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528884.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	6.7e-17	149	198	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_023528884.1 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198 78*****************......55**********************997 PP
2	AP2	42.8	1.3e-13	275	325	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a++k +g XP_023528884.1 275 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAALKCNG 325 89******.7**5553..2.26******99********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MLDLNLQVVS SDSVEMVTER LFQFPAIRME SAGSFNGDLS ASTTGDEDSS SNADEAFPFA 60 FGKDCAVQEN LTAKSLCISD NHRDQTMELF PLTGGLSSGS SSQKQWLEVS PPEFHYWGGA 120 PERRITAPPG QQQHQPMRKN RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 180 TAHAAARAYD RAAIKFRGVD ADINFNVSDY DEDIKQVGLA KLILITVRTS NSFSNAIDEE 240 LYSWLPLMSQ MSNFTKEEFV HILRRHSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY 300 IYLGLFDSEI EAARAYDKAA LKCNGKEAVT NFEPSSYVAE MASEAAGTAG LLLLWLYNLV 360 TRSIELTFGI ENCVDYVPYA ENNQILDLNL GIAPPNLCEA QSESIAMFER RAMPENSVSA 420 AIRSSHSQPY SFAVPSNYHS PWSVSNSSFF PNSRERATEM RMGVGSWEWQ IHGHPSGTTS 480 VPLFSAAASS GFPSSSSSTA IPSASSGVGE THFPAIFYCR S

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MLDLNLQVVS SDSVEMVTER LFQFPAIRME SAGSFNGDLS ASTTGDEDSS SNADEAFPFA  60
FGKDCAVQEN LTAKSLCISD NHRDQTMELF PLTGGLSSGS SSQKQWLEVS PPEFHYWGGA  120
PERRITAPPG QQQHQPMRKN RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  180
TAHAAARAYD RAAIKFRGVD ADINFNVSDY DEDIKQVGLA KLILITVRTS NSFSNAIDEE  240
LYSWLPLMSQ MSNFTKEEFV HILRRHSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY  300
IYLGLFDSEI EAARAYDKAA LKCNGKEAVT NFEPSSYVAE MASEAAGTAG LLLLWLYNLV  360
TRSIELTFGI ENCVDYVPYA ENNQILDLNL GIAPPNLCEA QSESIAMFER RAMPENSVSA  420
AIRSSHSQPY SFAVPSNYHS PWSVSNSSFF PNSRERATEM RMGVGSWEWQ IHGHPSGTTS  480
VPLFSAAASS GFPSSSSSTA IPSASSGVGE THFPAIFYCR S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-88	AP2 family protein