PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023528771.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 337aa    MW: 37940.5 Da    PI: 7.5956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023528771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.71.5e-3040144199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++ ++  l +ed+ g+sW+++++y+ +s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_023528771.1  40 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNDKGLLLNFEDRCGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGlGHlGK 134
                     89***************************9555568889************************************************66577788 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      ++++ ++r+
  XP_023528771.1 135 DRFFIDWRRR 144
                     8889999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MDLGSCSRFA LDSSTDFEKE EQQQQEMESS SLFVEKEHMF DKVVTPSDVG KLNRLVIPKQ  60
HAEKYFPLDS SSNDKGLLLN FEDRCGKSWR FRYSYWTSSQ SYVMTKGWSR FVKEKRLDAG  120
DIVSFQRGLG HLGKDRFFID WRRRPPHAPL DTPITFHHNH HLHGGGAAGV AQIPHHFHLH  180
QWTPVATPLS LPRDHLLHLP QNNSNHNNLT LFHNHNFNLY NHHYLNPPPI RDGGDSPSVL  240
YHLRSAPPPP PVAVGGGGGG IGKGAASSKT LRLFGVNMEC AVSEDQSDDE CDITTSTTTM  300
SPQFRVYDGM PMSIPIPMPN SNNKLTTDFF NKGRSSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-63B3 family protein