PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528712.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 364aa MW: 39918.9 Da PI: 9.6821

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.1	1.5e-20	56	147	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+ +r+++ +lrrg+lk+++W++v++ + ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++a XP_023528712.1 56 CWSHDETIALIDSYRDKWYSLRRGNLKATHWQDVADSVshrcPNASPPKTAVQCRHKMEKLRKRYRTELQRARSMpLSRFTSSWVHFKRMDA 147 8******************************999996655666778999*******************977999********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MISSAMGSPS SPIDGSPSSS HPSNPLQALP LSAPLPPPSN PPPQATASSR RLPPPCWSHD 60 ETIALIDSYR DKWYSLRRGN LKATHWQDVA DSVSHRCPNA SPPKTAVQCR HKMEKLRKRY 120 RTELQRARSM PLSRFTSSWV HFKRMDAMEK GPSAKPEESD SGGEEEEEED EDDQELYEEF 180 RNAGASGTRS VRKLYGNGIT SGGSNNGGGG SGGDGAAAGG FRIRIPTGVS IAQPGLKNYP 240 KAEQKMNPNS NPGSGMNPAA VNFGTRVVRE SNPMRPVTGK RGEREREGDP VAEMVSAIKT 300 LGDGFVRMER MKMEMAREIE AMRMEMEIKR TEMILDSQQR IVEAFAKAVT ENKKKAKRIP 360 SPEA

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MISSAMGSPS SPIDGSPSSS HPSNPLQALP LSAPLPPPSN PPPQATASSR RLPPPCWSHD  60
ETIALIDSYR DKWYSLRRGN LKATHWQDVA DSVSHRCPNA SPPKTAVQCR HKMEKLRKRY  120
RTELQRARSM PLSRFTSSWV HFKRMDAMEK GPSAKPEESD SGGEEEEEED EDDQELYEEF  180
RNAGASGTRS VRKLYGNGIT SGGSNNGGGG SGGDGAAAGG FRIRIPTGVS IAQPGLKNYP  240
KAEQKMNPNS NPGSGMNPAA VNFGTRVVRE SNPMRPVTGK RGEREREGDP VAEMVSAIKT  300
LGDGFVRMER MKMEMAREIE AMRMEMEIKR TEMILDSQQR IVEAFAKAVT ENKKKAKRIP  360
SPEA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-72	Trihelix family protein