PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528588.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 546aa MW: 60528.4 Da PI: 8.5214

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.9e-16	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+++ R++ qc +rwqk+l XP_023528588.1 59 KGGWTPQEDETLRNAVAAFKGKNWKKIAEYFH-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	62.1	1.1e-19	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v ++G+ W++Ia+ ++ gR +kqc++rw+++l XP_023528588.1 111 KGPWTQEEDDKIIELVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	55.5	1.3e-17	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++++G++ W+ Iar ++ gRt++ +k++w++ XP_023528588.1 163 KDAWTLEEELALMNAHRLHGNK-WAEIARVLP-GRTDNAIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MEEAKQEEFC LENKQSTAAT SSSVSEGSGC AAAKYPGMCS PAPTSPSHRR TSGPIRRAKG 60 GWTPQEDETL RNAVAAFKGK NWKKIAEYFH DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD 120 KIIELVSKYG PTKWSLIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRL 180 HGNKWAEIAR VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPVAKNSSQ NGARDTTRTP 240 PTKNFPLYSS KGSDSTAQTS SGNTDMYKLE VSSKDQVESS TPPDEDMVAS TSGVLNESAD 300 SRHANCWPGS SNITDPRCRK SGSARKNGTT TPGELENEIS KLDDDKITQT PSRFESPKYG 360 SLYYEPPQLE SRIPVDSEFL SMYMYETNNS SIGSPIGIFT PPCVKTRDLS IHSPESILRI 420 AARSFPTTPS ILRKRKTETQ TCLPPKQTQD GETETVISRE SGQEETLNNG DSMMGSPNGS 480 LCETPSNDHG PSRSNSKAFN ASPPYRLTSK RTAILKSVEK QLEFAFDKEK NNHAVQSVES 540 NGISSR

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MEEAKQEEFC LENKQSTAAT SSSVSEGSGC AAAKYPGMCS PAPTSPSHRR TSGPIRRAKG  60
GWTPQEDETL RNAVAAFKGK NWKKIAEYFH DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIIELVSKYG PTKWSLIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRL  180
HGNKWAEIAR VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPVAKNSSQ NGARDTTRTP  240
PTKNFPLYSS KGSDSTAQTS SGNTDMYKLE VSSKDQVESS TPPDEDMVAS TSGVLNESAD  300
SRHANCWPGS SNITDPRCRK SGSARKNGTT TPGELENEIS KLDDDKITQT PSRFESPKYG  360
SLYYEPPQLE SRIPVDSEFL SMYMYETNNS SIGSPIGIFT PPCVKTRDLS IHSPESILRI  420
AARSFPTTPS ILRKRKTETQ TCLPPKQTQD GETETVISRE SGQEETLNNG DSMMGSPNGS  480
LCETPSNDHG PSRSNSKAFN ASPPYRLTSK RTAILKSVEK QLEFAFDKEK NNHAVQSVES  540
NGISSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-167	MYB family protein