PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023528540.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 856aa    MW: 94980 Da    PI: 6.6528
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023528540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.4e-23148249199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      + +++ +++l+ +d+ g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_023528540.1 148 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-QQPPTQELVAKDLLGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 239
                     99*****************************63.4445569************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_023528540.1 240 RELRVGVRRA 249
                     999****996 PP
2Auxin_resp118.36.3e-39274356183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st+++F+v+Y+Pr+s+seFvv+++++++++k+++++G+Rfkm+fe+e+++e+r++Gtv+g +d+dp rW++SkWr+Lk
  XP_023528540.1 274 AWHAISTGTMFTVYYKPRTSPSEFVVPYDQYMESIKKSYTIGTRFKMRFEGEEAPEQRFTGTVIGCEDADPKRWKDSKWRCLK 356
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    
MTSAEASIKP NSASAFKNHA DSTKAPSDPP NALSAKDADI ALYTELWNAC AGPLVSVPRE  60
NERVFYFPQG HIEQVEASTN QVPDQQMPVY DLPSKILCRI INVCLKAEAD TDEVFAQITL  120
LPEANQDEDS VDKEPPPPPP RRFHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS  180
QQPPTQELVA KDLLGNEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENR  240
ELRVGVRRAM RQHGNVPSSV ISSHSMHLGV LATAWHAIST GTMFTVYYKP RTSPSEFVVP  300
YDQYMESIKK SYTIGTRFKM RFEGEEAPEQ RFTGTVIGCE DADPKRWKDS KWRCLKVRWD  360
ETSTISRPEK VSPWKIEPAL APPALNPLPM TRPKRHRSNM VPTSPDSSVL TREGPSRMII  420
DHSPASAFTR VLQGQEFSTL RGNLIDGNES DTAEKSVMWS PSLDDEKIDV VSTSKKHGAD  480
SWMPAGSGEP TYADLLSGFG ANIDSSCGVR ATLGDPAIVT ANSIRKHAVY QDGKFNFLGG  540
GSSWSVLPSG LSLNLVDSSQ KAHIQAGDLP YQMRGNATFN GVGDHSMAQC YRIDHSMAHC  600
SRIEQPNGNW SMPPPSSHFD YPVHSTELTS KPMLFQNQDI LNLKDGNCKL FGISLVKNPA  660
ISDPAELHRN VMNEADVIHA NRHPIHLHES ELSRGSNLAD KSLAINVADK LQHACTPNLK  720
DSQSKSQGSS TRSCTKVHKQ GIALGRSVDL SKFNNYDELI AELDQLFEFG GELLPPKKSW  780
LVVYTDDEGD MMLVGDDPWQ EFCGMVRKIF IYRREEVQKM NPRSLTLKGD ENPSVEGEEA  840
KEIKSPAVPS MSAPES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein