PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528387.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 612aa MW: 67901.5 Da PI: 6.4085

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528387.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	5.1e-13	443	489	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq XP_023528387.1 443 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 489 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MKIEDGLRSV GGKDEDKTVV AAVLGTRAFN YLMSCSVSNE NLFMAVRNEA NLQNKLSDLV 60 ERPNASNFSW NYAIFWQLSH SNSGDWVLGW GDGLCRDPRE GEETEATQIL SLRLEDESQQ 120 RMKKTALQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPSGEGG PGKCLASRKH 180 IWLLDILNSP SEYCVRSYLA KSAGIRTVVL VPTDVGVVEL GSVRSVSESL ELVQLVRSLF 240 SSQPSLDRVR SSATMSMMAE RKDENTPFAS LGIAERGGGN PKVFGQTLNS WNLGRSHFRE 300 KLAIRKMDDR SWEACANGGR IQFQSPRNGL LSPSLAHVHG LKQGNTTEIY GSPTPPVNNN 360 HEQLVNGVRD EYCLNPYQSQ KLAQMQIDFS GATSRPSVIH RVGVDSEHSD VEPQCKEEGP 420 GTDERRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD 480 AIAYINELQT KVKAMEVERE KSGVTSSEAT VNPEIEKKDQ FLDVDIDIEA GHDEVVVKVG 540 CPLESHPASR VIKAMKEAQI NVVDSKLCEA NDRVVHTFVI KSPGSEQLTK EQLIAAFSRD 600 STPLHPPLST VG

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MKIEDGLRSV GGKDEDKTVV AAVLGTRAFN YLMSCSVSNE NLFMAVRNEA NLQNKLSDLV  60
ERPNASNFSW NYAIFWQLSH SNSGDWVLGW GDGLCRDPRE GEETEATQIL SLRLEDESQQ  120
RMKKTALQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPSGEGG PGKCLASRKH  180
IWLLDILNSP SEYCVRSYLA KSAGIRTVVL VPTDVGVVEL GSVRSVSESL ELVQLVRSLF  240
SSQPSLDRVR SSATMSMMAE RKDENTPFAS LGIAERGGGN PKVFGQTLNS WNLGRSHFRE  300
KLAIRKMDDR SWEACANGGR IQFQSPRNGL LSPSLAHVHG LKQGNTTEIY GSPTPPVNNN  360
HEQLVNGVRD EYCLNPYQSQ KLAQMQIDFS GATSRPSVIH RVGVDSEHSD VEPQCKEEGP  420
GTDERRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD  480
AIAYINELQT KVKAMEVERE KSGVTSSEAT VNPEIEKKDQ FLDVDIDIEA GHDEVVVKVG  540
CPLESHPASR VIKAMKEAQI NVVDSKLCEA NDRVVHTFVI KSPGSEQLTK EQLIAAFSRD  600
STPLHPPLST VG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	425	433	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein