PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023528278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | MYB | ||||||||
Protein Properties | Length: 305aa MW: 34283.2 Da PI: 5.8311 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++q+G+ +W+++++ g+ R+ k+c++rw +yl XP_023528278.1 14 KGPWTPEEDIVLVSYIQQHGPANWRAVPANTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 5.8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ +v++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_023528278.1 67 RGNFTHHEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNHWNTHL 112 89********************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence |
MGRPPCCDKQ GVKKGPWTPE EDIVLVSYIQ QHGPANWRAV PANTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF THHEEKMIVH LQALLGNRWA AIASYLPQRT DNDIKNHWNT HLKKSLNNTN 120 HYPSPTTHLS GDALFTSRGQ WERRLQTDIQ MAKQALSDAL SPETSKPPPP PLPMSESQTP 180 NCQIPTYASS ADNIARWLEE WNKNPPTNSS CRSSSPPVVD SGGEKISGAG SSESMDTFLG 240 FDYFESSNSE VSPETSVFQG ESEMDESEGL LAMELLEEWL HGDAKDYYFT DITVDEKLKK 300 YDNLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 2e-93 | MYB family protein |