PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023528249.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 332aa MW: 36296.9 Da PI: 6.513 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56 | 6.5e-18 | 173 | 227 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_023528249.1 173 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 227 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127 | 8e-41 | 173 | 263 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+ke +eLr +lk XP_023528249.1 173 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELR-ALK 263 69*************************************************************************************9.555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence |
MELALSLGDA PISNKPFGFL SNGVSKLSSS SSSSLMALGF CVGLAHDSAS GSPSGSVHDD 60 DDEEEDDNHD RKMVLSGSDP PVQLELLPSA PVPRSSHLRF PWLSDHLIPE GEERVALDVN 120 RRPAVAAAEE TEDRAAVTAA LSSPNSTVSS FQMDFGVRAS SRISDDEENG SARKKLRLSK 180 DQSAFLEESF KEHSTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLRR 240 CCETLTEENR RLQKELQELR ALKTSQPFYM QLPATTLTMC PSCERVATAT PAASVATKTT 300 VTVATTAPNP AALCLANKAR ILPFPHLHQA AS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 222 | 230 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-75 | HD-ZIP family protein |