PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023527813.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 539aa MW: 59170.3 Da PI: 6.9479

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023527813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.8	6.6e-19	158	244	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L++a++e+ ++l+rg+l++ +Weev++ + r ++ ++s +qCk+k +nl+kryk ++++++++ s s++p+f+q+e XP_023527813.1 158 EWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAATVseRCEKQSKSVEQCKNKVDNLKKRYKLERQRMSSG-GVSISHWPWFKQME 244 5***********************************777778899*********************9.677889*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MASCDDDFSL LSDDHHHHHQ QHHQSTANHH HVPTPNHIHQ SYAPHRFTPR ASSVHASPPP 60 PPNQPAQPIL APSGSPKKIG GPIDEEEEED DGEDYGDAAF CSSSFDNGDP NRLGVGVDVR 120 VEKRKDQSDE LGEEGGSFSY KRAKPSSSGG EYRKDREEWS DAAISCLLDA YTEKFTQLNR 180 GNLRGRDWEE VAATVSERCE KQSKSVEQCK NKVDNLKKRY KLERQRMSSG GVSISHWPWF 240 KQMEQIVGNS LTMKVVSDDD RSVASSGNTP RMSKRYVLPT PNTAGHMNNV KPKAVTSPRW 300 RRVVFKISGA ALAGTGPNNI DSKVAMAIAR EVVMACRLGV EVAIVVGGRN FFCGDSWVTT 360 TGLDRCTAYQ IGMMATVMNS VLLQSAIEKM GVQTRVQSAF MLQEVAEPYN RQRAIRHLEK 420 GRVVIFGGIG AGTGNPLFST DTAAAFRASE IHAEAVLKGT NVDGVYDCNS HDSNFTFKHI 480 SFRELVSRGA ISMDMTALTF CEENNIPVVV FNLLEPGNIS KALCGDPVGT LIDQNGRIS

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MASCDDDFSL LSDDHHHHHQ QHHQSTANHH HVPTPNHIHQ SYAPHRFTPR ASSVHASPPP  60
PPNQPAQPIL APSGSPKKIG GPIDEEEEED DGEDYGDAAF CSSSFDNGDP NRLGVGVDVR  120
VEKRKDQSDE LGEEGGSFSY KRAKPSSSGG EYRKDREEWS DAAISCLLDA YTEKFTQLNR  180
GNLRGRDWEE VAATVSERCE KQSKSVEQCK NKVDNLKKRY KLERQRMSSG GVSISHWPWF  240
KQMEQIVGNS LTMKVVSDDD RSVASSGNTP RMSKRYVLPT PNTAGHMNNV KPKAVTSPRW  300
RRVVFKISGA ALAGTGPNNI DSKVAMAIAR EVVMACRLGV EVAIVVGGRN FFCGDSWVTT  360
TGLDRCTAYQ IGMMATVMNS VLLQSAIEKM GVQTRVQSAF MLQEVAEPYN RQRAIRHLEK  420
GRVVIFGGIG AGTGNPLFST DTAAAFRASE IHAEAVLKGT NVDGVYDCNS HDSNFTFKHI  480
SFRELVSRGA ISMDMTALTF CEENNIPVVV FNLLEPGNIS KALCGDPVGT LIDQNGRIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein