PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023527467.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 697aa    MW: 77557.4 Da    PI: 6.2151
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023527467.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.8e-2052107156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ +qVk+WFqNrR+++k
  XP_023527467.1  52 KKRYHRHTPQQIQELEAMFKECPHPDEKQRLELSRRLSLEIKQVKFWFQNRRTQMK 107
                     688999***********************************************999 PP
2START1771.1e-552104192205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 
                     +a++a++elvk+a  eep+W  +   +n++e+ + f+ + +  + +ea+r+s++++  +  l+ +l++ + +W e+++     a+t++vis g  
  XP_023527467.1 210 MALAAMDELVKMANGEEPLWIGEK--LNEEEYSRMFSGGCFggFVSEASRESALLFLHSSALLDTLMEAN-RWVEMFPnliaTATTTDVISGGmg 301
                     6899*******************9..**********66655999**************************.************************ PP

                     ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
           START  89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                         galqlm aelq lsp+vp R   f+R+++q+g+g+w++vdvS+d+ ++ + s+++ R   lpSg+li++++ng+skvtwveh +++++++h
  XP_023527467.1 302 gtrnGALQLMHAELQILSPMVPvRQLNFLRFCKQHGEGVWAVVDVSIDPITDTS-SPPCRR---LPSGCLIHDMPNGYSKVTWVEHSEYDESQIH 392
                     ****************************************************98.888888...******************************* PP

                     HHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 179 wllrslvksglaegaktwvatlqrqce 205
                     +l+r+lv+sgl +ga++w atlqrq e
  XP_023527467.1 393 ELYRPLVRSGLGFGARRWIATLQRQSE 419
                     ************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    
MISADAGFEE NVRRRRREEE ATDSRSGSDN MDGGGGSGDD LDAAVGDNPR KKKRYHRHTP  60
QQIQELEAMF KECPHPDEKQ RLELSRRLSL EIKQVKFWFQ NRRTQMKTQL ERHENTLLRH  120
ENEKLRTENM AIREAMRSPI CSNCGGPAII GEISLEEQQL RIENARLKDE LDRVCALAGK  180
FVGRPVPVSP PLEEYGGGMM MMERCVYLEM ALAAMDELVK MANGEEPLWI GEKLNEEEYS  240
RMFSGGCFGG FVSEASRESA LLFLHSSALL DTLMEANRWV EMFPNLIATA TTTDVISGGM  300
GGTRNGALQL MHAELQILSP MVPVRQLNFL RFCKQHGEGV WAVVDVSIDP ITDTSSPPCR  360
RLPSGCLIHD MPNGYSKVTW VEHSEYDESQ IHELYRPLVR SGLGFGARRW IATLQRQSEA  420
LATLLSSPSD HSGKYWSFLF FSLFRLRVIM NCFVYIGISA DGRRNMVKLA QRMTANFCTG  480
VCASTVYKWN KLNTGNNNVG EDVKVMTRKS VEDPGEPPGT VLSAATSVWV AATAERVFEF  540
LRDERLRSEW DILSNGGPMQ EMLHIPKAHH HHHANAVSLL RATSLNPNQS SMLILQETCS  600
DSSGSLVVYA PVDIPAMQVV MNGGDSAYVA LLPSGFAVVP AAEDCGGGSL LTVAFQILVN  660
SLPTDKLTVE SVETVNNLIS CTVQKIKTAL RCHELST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein