PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023527463.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 762aa    MW: 84031.6 Da    PI: 6.4376
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023527463.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.2e-20117172156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ +qVk+WFqNrR+++k
  XP_023527463.1 117 KKRYHRHTPQQIQELEAMFKECPHPDEKQRLELSRRLSLEIKQVKFWFQNRRTQMK 172
                     688999***********************************************999 PP
2START176.81.3e-552754842205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 
                     +a++a++elvk+a  eep+W  +   +n++e+ + f+ + +  + +ea+r+s++++  +  l+ +l++ + +W e+++     a+t++vis g  
  XP_023527463.1 275 MALAAMDELVKMANGEEPLWIGEK--LNEEEYSRMFSGGCFggFVSEASRESALLFLHSSALLDTLMEAN-RWVEMFPnliaTATTTDVISGGmg 366
                     6899*******************9..**********66655999**************************.************************ PP

                     ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
           START  89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                         galqlm aelq lsp+vp R   f+R+++q+g+g+w++vdvS+d+ ++ + s+++ R   lpSg+li++++ng+skvtwveh +++++++h
  XP_023527463.1 367 gtrnGALQLMHAELQILSPMVPvRQLNFLRFCKQHGEGVWAVVDVSIDPITDTS-SPPCRR---LPSGCLIHDMPNGYSKVTWVEHSEYDESQIH 457
                     ****************************************************98.888888...******************************* PP

                     HHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 179 wllrslvksglaegaktwvatlqrqce 205
                     +l+r+lv+sgl +ga++w atlqrq e
  XP_023527463.1 458 ELYRPLVRSGLGFGARRWIATLQRQSE 484
                     ************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    
MSSAPRFDSS GAHGGGIGGG HATLMASGAI AHPRLVTQSS FSKSMFSSPR LSLVNNNIDG  60
FGAGEMISAD AGFEENVRRR RREEEATDSR SGSDNMDGGG GSGDDLDAAV GDNPRKKKRY  120
HRHTPQQIQE LEAMFKECPH PDEKQRLELS RRLSLEIKQV KFWFQNRRTQ MKTQLERHEN  180
TLLRHENEKL RTENMAIREA MRSPICSNCG GPAIIGEISL EEQQLRIENA RLKDELDRVC  240
ALAGKFVGRP VPVSPPLEEY GGGMMMMERC VYLEMALAAM DELVKMANGE EPLWIGEKLN  300
EEEYSRMFSG GCFGGFVSEA SRESALLFLH SSALLDTLME ANRWVEMFPN LIATATTTDV  360
ISGGMGGTRN GALQLMHAEL QILSPMVPVR QLNFLRFCKQ HGEGVWAVVD VSIDPITDTS  420
SPPCRRLPSG CLIHDMPNGY SKVTWVEHSE YDESQIHELY RPLVRSGLGF GARRWIATLQ  480
RQSEALATLL SSPSDHSGKY WSFLFFSLFR LRVIMNCFVY IGISADGRRN MVKLAQRMTA  540
NFCTGVCAST VYKWNKLNTG NNNVGEDVKV MTRKSVEDPG EPPGTVLSAA TSVWVAATAE  600
RVFEFLRDER LRSEWDILSN GGPMQEMLHI PKAHHHHHAN AVSLLRATSL NPNQSSMLIL  660
QETCSDSSGS LVVYAPVDIP AMQVVMNGGD SAYVALLPSG FAVVPAAEDC GGGSLLTVAF  720
QILVNSLPTD KLTVESVETV NNLISCTVQK IKTALRCHEL ST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein