PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526851.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 338aa MW: 37556.7 Da PI: 10.219

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526851.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.7	9.7e-16	59	141	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea+++++ +r+klk+++We+v++++ ++ f++spk qCk+k+e+++kry+ + +++ + ++p++++l+ XP_023526851.1 59 EWSEGAVSTLLEAYESKWVLRNRAKLKGHDWEDVARHVsSRADFTKSPKtqtQCKNKIESMKKRYRSESASAAS-------SWPLYHRLH 141 5***********************************756667766543339***********999997.......49*9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MEIKPTPSSP LNSETTSPSL LFNHHHHLPS AVDAAAETPS PKKPPASTTG AGDRLKRDEW 60 SEGAVSTLLE AYESKWVLRN RAKLKGHDWE DVARHVSSRA DFTKSPKTQT QCKNKIESMK 120 KRYRSESASA ASSWPLYHRL HLLLRGNTLT PPPPPPTPVI LLDPPPPPPA PPPFLPAQNS 180 LGSNGVDRIN PKEDGVDNGR RDESDELSEK SKKMVIETDS STPAIVYSDK DKVSMRPKQP 240 TKMKNSKKKN KSTRLSTEDS LEQIAGSIRW LAEVVVRSEQ ARMEMIKDIE KMRAEAEAKR 300 GEMDLKRTQI IANTQLEIAK LFASATKPID SSLRIGRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	8e-88	Trihelix family protein